PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009789767.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 329aa MW: 37198.7 Da PI: 6.0577

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009789767.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.4	5.7e-39	63	162	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dCvlapyfp++++++f n+hklFG+sn++k++++l++ +++am+++++++++ra+dPv G++++i++lq++++ kael+ XP_009789767.1 63 ACAACKYQRRKCAPDCVLAPYFPHDRQRQFLNAHKLFGVSNITKIIRHLDQPLKDEAMRTIIFQSDVRANDPVGGCYRIIRDLQRHIDYCKAELD 157 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++ XP_009789767.1 158 IVLHQ 162 88776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.198	62	163	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-36	63	158	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MQNQITTIST SIPNHHHTTH TTFATANNLN HNYSTKRVNN NNNNNNNNNN KNVLLRVNGT 60 GQACAACKYQ RRKCAPDCVL APYFPHDRQR QFLNAHKLFG VSNITKIIRH LDQPLKDEAM 120 RTIIFQSDVR ANDPVGGCYR IIRDLQRHID YCKAELDIVL HQLAYCRAQA VAAAAAASEQ 180 QILADHHATE ESFNENNCDG VVNQADPLVN NNASSYDQQT IDYHPHSYYN HTSCQQGEDD 240 QQYDEIQDGQ LDLADINFPW SLHEQESTST STPNSLMKQL SVHEQCDNIK PILEGITGFG 300 EEGLSFEHDQ AFDQHSYSTR EHSPIEGRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-26	59	157	7	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-26	59	157	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009789767.1	0.0	PREDICTED: LOB domain-containing protein 22-like
TrEMBL	A0A1U7XCG3	0.0	A0A1U7XCG3_NICSY; LOB domain-containing protein 22-like
STRING	XP_009789767.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9926	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-52	LOB domain-containing protein 22