PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009789767.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 329aa MW: 37198.7 Da PI: 6.0577 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.4 | 5.7e-39 | 63 | 162 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dCvlapyfp++++++f n+hklFG+sn++k++++l++ +++am+++++++++ra+dPv G++++i++lq++++ kael+ XP_009789767.1 63 ACAACKYQRRKCAPDCVLAPYFPHDRQRQFLNAHKLFGVSNITKIIRHLDQPLKDEAMRTIIFQSDVRANDPVGGCYRIIRDLQRHIDYCKAELD 157 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++ XP_009789767.1 158 IVLHQ 162 88776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.198 | 62 | 163 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-36 | 63 | 158 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MQNQITTIST SIPNHHHTTH TTFATANNLN HNYSTKRVNN NNNNNNNNNN KNVLLRVNGT 60 GQACAACKYQ RRKCAPDCVL APYFPHDRQR QFLNAHKLFG VSNITKIIRH LDQPLKDEAM 120 RTIIFQSDVR ANDPVGGCYR IIRDLQRHID YCKAELDIVL HQLAYCRAQA VAAAAAASEQ 180 QILADHHATE ESFNENNCDG VVNQADPLVN NNASSYDQQT IDYHPHSYYN HTSCQQGEDD 240 QQYDEIQDGQ LDLADINFPW SLHEQESTST STPNSLMKQL SVHEQCDNIK PILEGITGFG 300 EEGLSFEHDQ AFDQHSYSTR EHSPIEGRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-26 | 59 | 157 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-26 | 59 | 157 | 7 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009789767.1 | 0.0 | PREDICTED: LOB domain-containing protein 22-like | ||||
TrEMBL | A0A1U7XCG3 | 0.0 | A0A1U7XCG3_NICSY; LOB domain-containing protein 22-like | ||||
STRING | XP_009789767.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9926 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-52 | LOB domain-containing protein 22 |