PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009789501.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 511aa    MW: 56063.7 Da    PI: 9.2575
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009789501.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-055173123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r  nL+ H r H
  XP_009789501.1 51 FICEICNKGFQRDQNLQLHRRGH 73
                    89*******************88 PP
2zf-C2H2130.0003128150123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H + +
  XP_009789501.1 128 WKCEKCSKKYAVQSDWKAHTKIC 150
                     58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.54E-75073No hitNo description
Gene3DG3DSA:3.30.160.601.4E-55073IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0225173IPR015880Zinc finger, C2H2-like
PfamPF121716.1E-55173IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8455173IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SMARTSM003559093123IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.0E-5116149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.54E-7123148No hitNo description
SMARTSM00355130128148IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MMSDDGLSFI QDPNPNSNPS AKRKRNLPGK PDPDAEVIAL SPKSLMATNR FICEICNKGF  60
QRDQNLQLHR RGHNLPWKLK QRNKNEVIKK KVYICPEKTC IHHDPSRALG DLTGIKKHYS  120
RKHGEKKWKC EKCSKKYAVQ SDWKAHTKIC GTREYKCDCG TLFSRKDSFI THRAFCDALA  180
EESARFTSVP STATLNFRNE LLSGGMISGN PQFGNSLFRP EFMGLGLDPA INHQLNNVDG  240
QKPRMPLWLE NNINPNSGNN ANDFLVASSS STSNLPHQLV QMAPPHNNQQ WFVNGGGGRD  300
DSGFGSSSSL PSRVLREEED NKRNLCETIS SMYYNSHQQE TTTPPSHMSA TALLQKAAQM  360
GSTRSNSALF GSGFGLMGSS FSKSNGQFAA DQNLNGLMMN SPPSAVSTLT TTNNNQAGNR  420
LLLGGDLMNS SSLEGNSSAK NSDPFLMLNN KGKQINLSGN EAIEGSLTRD FLGVGGNENR  480
PFLSKTELAK FGNTSSSAMG LSQYNGSHLD E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-37124189368Zinc finger protein JACKDAW
5b3h_F9e-37124189368Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-161HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789501.10.0PREDICTED: zinc finger protein JACKDAW-like
RefseqXP_016442367.10.0PREDICTED: protein indeterminate-domain 9-like isoform X2
TrEMBLA0A1S3XRQ40.0A0A1S3XRQ4_TOBAC; protein indeterminate-domain 9-like isoform X2
TrEMBLA0A1U7XIP20.0A0A1U7XIP2_NICSY; zinc finger protein JACKDAW-like
STRINGXP_009789501.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-104C2H2-like zinc finger protein