PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009789029.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 460aa    MW: 50142.5 Da    PI: 6.6724
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009789029.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.5e-31248306259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  XP_009789029.1 248 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 306
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.673242308IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-30246308IPR003657WRKY domain
SuperFamilySSF1182903.92E-26246308IPR003657WRKY domain
SMARTSM007741.4E-37247307IPR003657WRKY domain
PfamPF031069.9E-26249306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MCSKFQLQKT TMENNYQGDL ADIFLGSSGP NISGANNITT TSGESSSTTA AAAVTDRWLG  60
QFPSHPINYS AAGIEEPSVQ DFGDPFCNLR DPLFHDIDML PAGSSLFTSN NDNNNNNNNN  120
NISLFGPKIL EETEMKSRPT GNIFSRMLQI SPTTKLAAAM SPCNSPMTGA VALQPPSTVI  180
AGGGALVAND AIISPNSSKT CLMENSGLQI SSPRNTGIKR RKSQAKKVVC IPAPAPANSR  240
QGGEIVPSDL WAWRKYGQKP IKGSPYPRGY YRCSSSKGCS ARKQVERSRT DPNMLVITYT  300
SEHNHPWPTQ RNSLAGSTRS QPNNSKHTTT STSKNNTNSK DDQQNNISTV AQVNISKVKE  360
EVAELQDLRD DHHHQQLAVE MRDVEFSKDS YQPILPDSSS NHSHEDFFAD LVELEADPLN  420
LLFAKTLSGD INEAGQKKTI DAFNLYDWSG NNNNKSQADP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-26222309280Disease resistance protein RRS1
5w3x_D6e-26222309280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754413e-59HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755143e-59HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789029.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A1U7XQ250.0A0A1U7XQ25_NICSY; probable WRKY transcription factor 14
STRINGXP_009789029.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.19e-88WRKY DNA-binding protein 14