PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009788809.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 926aa    MW: 104549 Da    PI: 7.6625
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009788809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.32e-51301463118
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e k rwl+++ei+aiL n++ +++  ++ + p sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e++ptf r
  XP_009788809.1  30 EEaKMRWLRPNEIHAILCNYKYFNIFVKPVNLPMSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDHPTFVR 124
                     45599****************************************************************************************** PP

            CG-1  97 rcywlLeeelekivlvhylevk 118
                     rcywlL+++le+ivlvhy+e++
  XP_009788809.1 125 RCYWLLDKSLEHIVLVHYRETQ 146
                     *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.40525151IPR005559CG-1 DNA-binding domain
SMARTSM010766.9E-7528146IPR005559CG-1 DNA-binding domain
PfamPF038596.6E-4631144IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.100.001370467IPR013783Immunoglobulin-like fold
SuperFamilySSF812968.54E-12378464IPR014756Immunoglobulin E-set
SuperFamilySSF484031.71E-16563679IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.2E-16563677IPR020683Ankyrin repeat-containing domain
PfamPF127961.7E-6564643IPR020683Ankyrin repeat-containing domain
CDDcd002041.74E-12579673No hitNo description
PROSITE profilePS5029715.273581685IPR020683Ankyrin repeat-containing domain
SMARTSM002483.7E-6614643IPR002110Ankyrin repeat
PROSITE profilePS5008811.728614646IPR002110Ankyrin repeat
SuperFamilySSF525403.54E-6755827IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.181761787IPR000048IQ motif, EF-hand binding site
SMARTSM0001516776798IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.346777806IPR000048IQ motif, EF-hand binding site
PfamPF006120.21779797IPR000048IQ motif, EF-hand binding site
SMARTSM000155.3E-4799821IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.889800824IPR000048IQ motif, EF-hand binding site
PfamPF006121.2E-4801821IPR000048IQ motif, EF-hand binding site
SMARTSM0001515878900IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.389880908IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 926 aa     Download sequence    Send to blast
MESSRAGQLA GSDIHGFHTL QDLDIPSIME EAKMRWLRPN EIHAILCNYK YFNIFVKPVN  60
LPMSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDHP  120
TFVRRCYWLL DKSLEHIVLV HYRETQEAQG SPATSVAKGS PATPVNSNSS SDPSDPSGWV  180
LSEECNSVDE RTYGSSQHAH LEPNRDVTAK NHEQRLLEIN TLEWDELLAP DNPNKLIATQ  240
EAGGRASVGQ QNQIEVNGYS LNDGSLSVSR VPVASLESFV CQVAGSDTVN FNPSNDMPFR  300
SGDGQMTSNF RKNEPGVTTV GAGDSFDSLN KDGLQTQDSF GRWINYFISD SPGSADEMMT  360
PESSVTIDQS YVMQQIFNIT EISPTWALSS EETKILVIGH FPGAQSQLAK SNLFCVCADV  420
CFPAEFVQSG VYRCVISPQP PGLVSLYLSF DGNTPISQVM TYEFRAPSAC KWTAPLEEQS  480
SWDEFRVQMR LAHLLFSTSK SLSIFSSKVH QDSLKEAKRF VRKCSHITDN WAYLIKSIED  540
RKLPVPHAKD CLFELSLQTK FHEWLLERVI GGCKTSEWDE QGQGVIHLCA ILGYTWAVYP  600
FSWSGLSLDY RDKYGWTALH WAAHYGREKM VATLLSAGAK PNLVTDPTSE NPGGSTAADL  660
ASKNGFEGLG AYLAEKALVA HFKDMTLAGN VSGSLQTTTE HINPGNFTEE ELYLKDTLAA  720
YRTAADAAAR IQAAFREHSF KVQTKAVESS NPEMEARNIV AAMKIQHAFR NYESRKKLAA  780
AARIQYRFRS WKMRKDFLNM RRHAIKIQAV FRGFQVRKQY RKIVWSVGVL EKAVLRWRLK  840
RKGFRGLQVQ SSQAVDIKPD GDVEEDFFRA SRKQAEERVE RSVVRVQAMF RSKRAQEEYR  900
RMKLEHDNAT LEYERASLLN PDIQIG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5660490.0JN566049.1 Solanum lycopersicum calmodulin-binding transcription factor SR3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009788809.10.0PREDICTED: calmodulin-binding transcription activator 5 isoform X1
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A1U7XPE50.0A0A1U7XPE5_NICSY; calmodulin-binding transcription activator 5 isoform X1
STRINGXP_009788809.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45652232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]