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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009788762.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SBP | ||||||||
Protein Properties | Length: 508aa MW: 56631.4 Da PI: 8.1856 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.2 | 1.7e-41 | 216 | 291 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC++dl++ k+yh+rhkvC+ hsk++ v+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk+q XP_009788762.1 216 CQVHGCNKDLTSSKDYHKRHKVCDEHSKTAIVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKPQ 291 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.1E-33 | 210 | 277 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.513 | 213 | 290 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.75E-39 | 214 | 295 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.2E-32 | 216 | 289 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MEPLSYGLEG RGFLFPDNVE LSVDTFSRSR NTVKEWNLNP FCDVDKSICG PSQEITESTG 60 FLESGIADIF KKSAASNPCP GALSGEIGNG SMLELGAMFN HSATKSNNPM SLPIGLKLDE 120 LTDYGEVRTS QSSKESSVLS SPESSLPTGK AAQRKSLHSQ FPISQVRGQK EEESIVYREV 180 KSNQSLKRNP DLSTVNSSLQ GKRLRTTNLH SEVPFCQVHG CNKDLTSSKD YHKRHKVCDE 240 HSKTAIVIVN GIEQRFCQQC SRFHLLAEFD EGKRSCRKRL AGHNERRRKP QFDSHWGSRF 300 LDMTQRRVPF LFPEILPGSF FYQENYEVNN NDQHLRLDRK PFCISQLAMS VTSGQSPAES 360 NQHQYGVRKQ DLSKVPVGST ILSVQEISAG QNSSCALSLL SAHSQNLLRN STGISPTLPW 420 MVKGDAHAYI KDDHHNLAKS PRVSVPEMQR DGHDQRANSM NSKNCLSPEG GPTMDLVQLS 480 SHLLRVEQQK NSVQVKQEND IFSSFAST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-29 | 211 | 289 | 6 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LC073294 | 0.0 | LC073294.1 Nicotiana tabacum NtabSPL6-6 mRNA for squamosa promoter binding protein NtabSPL6-6, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009788762.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_009788763.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_016502562.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A1S4CMR2 | 0.0 | A0A1S4CMR2_TOBAC; squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A1U7XD13 | 0.0 | A0A1U7XD13_NICSY; squamosa promoter-binding-like protein 6 | ||||
STRING | XP_009788762.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6831 | 19 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 7e-57 | SBP family protein |