PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009787651.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 240aa MW: 27187.7 Da PI: 6.395

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009787651.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.3	3.7e-15	69	115	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+E+rRRdriN +++Lr+l+P++ +K++Ka+ L+ +ve++k+L XP_009787651.1 69 RSHSEAEKRRRDRINAQLSTLRKLIPSS-----EKMDKAALLRSVVEHVKDL 115 78***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.564	66	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.25E-12	69	116	No hit	No description
Pfam	PF00010	8.5E-13	69	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-14	69	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-16	69	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-13	72	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	2.4E-5	154	216	No hit	No description
CDD	cd04873	1.95E-6	154	202	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MMDNSSCSEY WPETETETHF HHFQEVAAAS PFVLPLVPNS CDDTSFQLYE NPCYWSQQFE 60 EDTSASASRS HSEAEKRRRD RINAQLSTLR KLIPSSEKMD KAALLRSVVE HVKDLKGRAK 120 EISKVVNTPT DIDEVIIEHL DEDENSSNSI ILKVCLCCDD RPELFSELNR ALNNLKLTTE 180 EANITSLGGR IKCVFVLKSV NGVCLNSLKH SLSRIAISPS TSNYRIKSKR QKFFLPANFS

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	3e-36	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009787651.1	1e-178	PREDICTED: transcription factor bHLH51
Swissprot	Q9XEF0	3e-42	BH051_ARATH; Transcription factor bHLH51
TrEMBL	A0A1U7XDC1	1e-177	A0A1U7XDC1_NICSY; transcription factor bHLH51
STRING	XP_009787651.1	1e-177	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5820	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	2e-37	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]