PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009787489.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 287aa MW: 31626.9 Da PI: 8.3146

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009787489.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	103	125	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H XP_009787489.1 103 FSCSFCKREFSTSQALGGHQNAH 125 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.2E-5	93	129	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.82E-6	100	130	No hit	No description
PROSITE profile	PS50157	11.552	103	130	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	105	125	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MDTFSMKKPC SSEASSISAA SEEIDTNTKK MKGKVMDLGS ELKTHELSSA GVLLDLKVHN 60 SASNLELNLF NSTSSMKNSA PASESSNEAM PNKQRRSSES RVFSCSFCKR EFSTSQALGG 120 HQNAHKQERA LAKRRNGLVD VVSPFGPPNY HPYYNPYSSY TTHLPFHGTF TSRSSLGVQG 180 DSSTIHKPSP YNPWSVFSGY NYRFNPEKWS SSGSSVLRTE NLGIGSAPLE NSLKFENKNS 240 AKGFCLRDSP VKIDNNRGGN NKRKVGFGEE DAEENEEDSE IDLNLKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009787489.1	0.0	PREDICTED: zinc finger protein 4
Refseq	XP_016434992.1	0.0	PREDICTED: zinc finger protein 4-like
TrEMBL	A0A1S3X541	0.0	A0A1S3X541_TOBAC; zinc finger protein 4-like
TrEMBL	A0A1U7XKL7	0.0	A0A1U7XKL7_NICSY; zinc finger protein 4
STRING	XP_009787489.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3967	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	3e-20	zinc finger protein 3