PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009786196.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 543aa    MW: 59758.4 Da    PI: 8.1956
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009786196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.63.1e-42186262278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     Cqv+gC +dls++k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rL++hnerrrk+q+
  XP_009786196.1 186 CQVQGCGKDLSSCKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLSGHNERRRKPQT 262
                     **************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.9E-34180247IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.872183260IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.23E-39184263IPR004333Transcription factor, SBP-box
PfamPF031101.8E-31186259IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MESWSYVSGG GKGFVSEESV STGATQCIKL PLCAGYGERP DYKESVSVDD GISLGKNRVN  60
GWELNTPCSW RNSMGWSSNE GVKNQDFAET RSQDLMRKSL PNNQIRDAMS SKLGGQRSFV  120
SIRVPHNAFS GEDETSSVVE SNCKESSLID LKLGSFKSPN IIPNLSSTAP AKRNRAGGLS  180
SHTPFCQVQG CGKDLSSCKD YHKRHKVCEV HSKTAKVIVN GIEQRFCQQC SRFHLLAEFD  240
DGKRSCRKRL SGHNERRRKP QTGLHPGRAG RLLQSYAGTR FQGTPFATSS FICQDILGSG  300
LLHQPKHDMH DWYKNLKVEH SSDYSPQLTM PFTNGHSQPR PLFSTSYHTD KHPPALHDEG  360
ITAITRSKTN ESSNSYLNDI EGSDFVSRSL FHNTSIGSEV LNVMDSASTF QGISNSGCAL  420
SLLSSQSQDS SNYSSLVPNA HHLITPRSNA HYNVTQTSEK FPGVNLKDST SNASSIFNLS  480
GAISAEDGME QILRNNCGIN GSIHGSDYVN TKNLLSCEDG PTIDLLQLSS QLHRVEHQRH  540
FMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-29180259584squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0733020.0LC073302.1 Nicotiana tabacum NtabSPL6-1 mRNA for squamosa promoter binding protein NtabSPL6-1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786196.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A1U7X9610.0A0A1U7X961_NICSY; squamosa promoter-binding-like protein 6
STRINGXP_009786196.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51871639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.15e-50SBP family protein