PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009785728.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 828aa    MW: 90301.4 Da    PI: 5.0201
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009785728.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.4e-096087127
                    --S---SGGGGTS.--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHgp 27
                    +kt+lC++f+r+   C++Gd+C++aHg+
  XP_009785728.1 60 WKTSLCSYFRRNDnSCSHGDSCRYAHGE 87
                    8**********87*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-135393IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.59E-75892IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-45987IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9065988IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-76087IPR000571Zinc finger, CCCH-type
PROSITE profilePS5168744.33249828IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.05E-48252277IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.05E-48309444IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.05E-48484604IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1502.3E-63501604IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138478.0E-10548605IPR025714Methyltransferase domain
CDDcd024401.79E-7550622No hitNo description
Gene3DG3DSA:3.40.50.1502.3E-63711766IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.05E-48714828IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059582.1E-7714762IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300722754IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1502.3E-63803828IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MSTETLNTKI NGEDSTEQLH SPETSTDLTV EITPTEKRKR EETETETETG QQQQQPNPLW  60
KTSLCSYFRR NDNSCSHGDS CRYAHGESEL RPRPDNTWDP TSERAKKIAK KDDDGDKSEN  120
KEEEKCNDVM MTEALDNEEE CSSSGTGLSK CLVNLPMKWS SDNLRCFLKQ HELNGKLVGN  180
KNLKVGDVIP RPFERKGNSA ISSSPASQQG EKQTQTGDSL DSTKISDETE AEDPLSSDSV  240
LKGRSVRDVV TPLANVPYAD QLEQKKSSLM QTLKKLTRNA RKACPNGVSL PEWILKSREI  300
GGQPCKLEGI IDSPLIEGYR NKCEFSVGYS VLGKPTVGFL LGNFREGVTA VEEPVNCPNV  360
SGIACKYAAI FQDFLQQSTL PIWNRLNNTG FWRQLTVREG RMPGKKVKVE NSDASISEVM  420
LIVQVCTLAL DDAVVNDEFQ SMAKAFAMGA SSASPTLPLT VLVVQDHTGI SNVAPADAPL  480
RVLPFPKRES YSELQADNAV AEAKIHDFIN GLRFCISPTA FFQVNTLAAE KLYSLAGDWA  540
SLGPDTLLFD VCCGTGTIGL TLANRVGMVV GIEMNASAVS DAQRNAEING IKNCRFICGK  600
AEDVMGSVLR EYLTSPPKVD GIPDIQENTT STEKTDSIVN ASETDEGSGI GSATAPIGNT  660
DSTDNTVEPE GKAGLERTNG TSLSESSAGC ITESETQLGK SCSSDNLTTS VRHFKNVVAI  720
VDPPRVGLHP TVIKLLRTNS RLRRLVYISC NPESLVANAI ELCTPSPDEA ERGNNKNNRG  780
WRNMSSASLA RHRTKSMPSS EPFQPVKAMA VDLFPHTSHC ELVMLLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A2e-1928861886384Uncharacterized RNA methyltransferase SP_1029
5zq0_A2e-1928861887385Uncharacterized RNA methyltransferase SP_1029
5zth_A2e-1928861887385Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785728.10.0PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X2
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A1U7X4D70.0A0A1U7X4D7_NICSY; zinc finger CCCH domain-containing protein 24 isoform X2
STRINGXP_009785727.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]