PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009785461.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GeBP

Protein Properties

Length: 418aa MW: 45729.8 Da PI: 4.616

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009785461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	117.5	7.2e-37	98	198	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 klfqrlw++eDei lLqG++++++++g s ++d++afy+++k++++++++k+qlveK+rrLKkK+++ ++k++sgk+++f+++hdq +fe+ XP_009785461.1 98 KLFQRLWTDEDEIELLQGFLEYTTQRGGinssSHHHDTTAFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKMASGKDFVFKSSHDQATFEI 192 579*********************9877644555******************************************************* PP DUF573 92 skkiWg 97 s+kiW XP_009785461.1 193 SRKIWS 198 ***6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.3E-34	100	198	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MASVEDQHNN QVYNDDDLDD DVVDEEDDDV DVDDDDDEDS TSSLPAPTPA PVDQQTVTIA 60 VVGVPAQRIN EFAAVTPPPT AATIVEEKKP SAIDDSRKLF QRLWTDEDEI ELLQGFLEYT 120 TQRGGINSSS HHHDTTAFYD QIKSKLQLDF NKNQLVEKLR RLKKKYRNVM SKMASGKDFV 180 FKSSHDQATF EISRKIWSNA VPIVVRGGGS AAPPPPEDGG FDDEDSHLNL NANFVDHSHN 240 GIDIKTPRSR KRSRGGAVKV EEKHGFIQHY YLPSPSGGGT NMSSPAPAPA PAPGFTPFPM 300 AAPQATAPPT TTAAVAASAA ASIPSLIEET VRSCLSPIFK ELLNNVTNLS GSRSFGFGMA 360 LSPIPLGFGS SGAMNSDMMA DEKWRKQQML ELEVYSRRLE LVQDQIKAQL EELRSMST

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MASVEDQHNN QVYNDDDLDD DVVDEEDDDV DVDDDDDEDS TSSLPAPTPA PVDQQTVTIA  60
VVGVPAQRIN EFAAVTPPPT AATIVEEKKP SAIDDSRKLF QRLWTDEDEI ELLQGFLEYT  120
TQRGGINSSS HHHDTTAFYD QIKSKLQLDF NKNQLVEKLR RLKKKYRNVM SKMASGKDFV  180
FKSSHDQATF EISRKIWSNA VPIVVRGGGS AAPPPPEDGG FDDEDSHLNL NANFVDHSHN  240
GIDIKTPRSR KRSRGGAVKV EEKHGFIQHY YLPSPSGGGT NMSSPAPAPA PAPGFTPFPM  300
AAPQATAPPT TTAAVAASAA ASIPSLIEET VRSCLSPIFK ELLNNVTNLS GSRSFGFGMA  360
LSPIPLGFGS SGAMNSDMMA DEKWRKQQML ELEVYSRRLE LVQDQIKAQL EELRSMST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009785461.1	0.0	PREDICTED: uncharacterized protein LOC104233721
Refseq	XP_016489373.1	0.0	PREDICTED: uncharacterized protein LOC107809283
TrEMBL	A0A1S4BKE7	0.0	A0A1S4BKE7_TOBAC; uncharacterized protein LOC107809283
TrEMBL	A0A1U7X704	0.0	A0A1U7X704_NICSY; uncharacterized protein LOC104233721
STRING	XP_009785461.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4052	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-78	DNA-binding storekeeper protein-related transcriptional regulator