PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009785068.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GeBP

Protein Properties

Length: 680aa MW: 74152.1 Da PI: 4.7017

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009785068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	75.4	1e-23	35	123	3	96
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 f+++ws+eDe++lL G+i+f++++g + + ++ afy++v +s+ ++++ +ql eK+r L+kK +k+v++ ++ +++h+ + f+ls+kiW XP_009785068.1 35 FSKVWSDEDEVSLLTGIIKFRKEKGLDIQTNMFAFYNYVIDSLMLRATLTQLREKVRALRKKHEKNVSR-----KKGPKTPHEVELFQLSQKIW 123 899****************************************************************.....556679************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	6.2E-22	35	123	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MADDAGSGSG SGSSSTDQAQ NQRTAQKNKS KHTPFSKVWS DEDEVSLLTG IIKFRKEKGL 60 DIQTNMFAFY NYVIDSLMLR ATLTQLREKV RALRKKHEKN VSRKKGPKTP HEVELFQLSQ 120 KIWMVNVKES EHQKEFVGGK SEIPNTSEPR QPVKQNLLEN WMSQQHIPEI EQPKQEIIPK 180 IGLGSQNLLT LLKRIAEDVE LVANAMSRSQ RQVDGERSDL YFQSTDLLVK FGRLVKEIKA 240 KPEMRHSSEL LEQEILKAYL EAKIEHTQLV SNAYNAFIQV DVVVAAPTKP MKKGKREAEN 300 EIEKLGSTKK QKKHLAVAQA AEKKKSDAKA QKKKKKKKQE TSSCDDSSQP EDEKKLTEAA 360 APPKKVTPAK NENLASSSDD SDSSGEDEAP SKKAVATSTS KKDESSDESS SEDDSSSSEA 420 DEAPAAASKK EESSDDDDDD DEPPSKVVSQ STKAAQAVKK NSDSSEETDY DEDDSDSDKG 480 KAAAVCKKKV PSSADGDDES KDDTSEESDE EEPQKKKIKP SSTPTVSNTR KESSSEEDVP 540 AAKICPADGS AAASKKDESS DESSSEDDSS AEEEDAVNKA PAAAPKKGSA AASKKEESSD 600 ESSSDDDPSS TPAVSKKESS SEESSEEDES SEEEEDEKPS RTPKKQKTPI TPKAQTPGSK 660 TLFVGNLPNL VEDGSFEGSC

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MADDAGSGSG SGSSSTDQAQ NQRTAQKNKS KHTPFSKVWS DEDEVSLLTG IIKFRKEKGL  60
DIQTNMFAFY NYVIDSLMLR ATLTQLREKV RALRKKHEKN VSRKKGPKTP HEVELFQLSQ  120
KIWMVNVKES EHQKEFVGGK SEIPNTSEPR QPVKQNLLEN WMSQQHIPEI EQPKQEIIPK  180
IGLGSQNLLT LLKRIAEDVE LVANAMSRSQ RQVDGERSDL YFQSTDLLVK FGRLVKEIKA  240
KPEMRHSSEL LEQEILKAYL EAKIEHTQLV SNAYNAFIQV DVVVAAPTKP MKKGKREAEN  300
EIEKLGSTKK QKKHLAVAQA AEKKKSDAKA QKKKKKKKQE TSSCDDSSQP EDEKKLTEAA  360
APPKKVTPAK NENLASSSDD SDSSGEDEAP SKKAVATSTS KKDESSDESS SEDDSSSSEA  420
DEAPAAASKK EESSDDDDDD DEPPSKVVSQ STKAAQAVKK NSDSSEETDY DEDDSDSDKG  480
KAAAVCKKKV PSSADGDDES KDDTSEESDE EEPQKKKIKP SSTPTVSNTR KESSSEEDVP  540
AAKICPADGS AAASKKDESS DESSSEDDSS AEEEDAVNKA PAAAPKKGSA AASKKEESSD  600
ESSSDDDPSS TPAVSKKESS SEESSEEDES SEEEEDEKPS RTPKKQKTPI TPKAQTPGSK  660
TLFVGNLPNL VEDGSFEGSC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	322	337	KKKSDAKAQKKKKKKK
2	331	337	KKKKKKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009785068.1	0.0	PREDICTED: nucleolin 2-like isoform X2
TrEMBL	A0A1U7X2L3	0.0	A0A1U7X2L3_NICSY; nucleolin 2-like isoform X2
STRING	XP_009785066.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G44810.1	6e-13	DNA-binding storekeeper protein-related transcriptional regulator