PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009785067.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 711aa    MW: 77175.2 Da    PI: 4.6963
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009785067.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57375.31.1e-2335123396
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                     f+++ws+eDe++lL G+i+f++++g + + ++ afy++v +s+ ++++ +ql eK+r L+kK +k+v++     ++  +++h+ + f+ls+kiW
  XP_009785067.1  35 FSKVWSDEDEVSLLTGIIKFRKEKGLDIQTNMFAFYNYVIDSLMLRATLTQLREKVRALRKKHEKNVSR-----KKGPKTPHEVELFQLSQKIW 123
                     899******************************************************************.....556679************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.6E-2235123IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MADDAGSGSG SGSSSTDQAQ NQRTAQKNKS KHTPFSKVWS DEDEVSLLTG IIKFRKEKGL  60
DIQTNMFAFY NYVIDSLMLR ATLTQLREKV RALRKKHEKN VSRKKGPKTP HEVELFQLSQ  120
KIWMVNVKES EHQKEFVGGK SEIPNTSEPR QPVKQNLLEN WMSQQHIPEI EQPKQEIIPK  180
IGLGSQNLLT LLKRIAEDVE LVANAMSRSQ RQVDGERSDL YFQSTDLLVK FGRLVKEIKA  240
KPEMRHSSEL LEQEILKAYL EAKIEHTQLV SNAYNAFIQV DVVVAAPTKP MKKGKREAEN  300
EIEKLGSTKK QKKHLAVAQA AEKKKSDAKA QKKKKKKKQE TSSCDDSSQP EDEKKLTEAA  360
APPKKVTPAK NENLASSSDD SDSSGEDEAP SKKAVATSSK NGLAAKNNDD PSDDSNSEAK  420
KPPANGSAAA SKKDESSDES SSEDDSSSSE ADEAPAAASK KEESSDDDDD DDEPPSKVVS  480
QSTKAAQAVK KNSDSSEETD YDEDDSDSDK GKAAAVCKKK VPSSADGDDE SKDDTSEESD  540
EEEPQKKKIK PSSTPTVSNT RKESSSEEDV PAAKICPADG SAAASKKDES SDESSSEDDS  600
SAEEEDAVNK APAAAPKKGS AAASKKEESS DESSSDDDPS STPAVSKKES SSEESSEEDE  660
SSEEEEDEKP SRTPKKQKTP ITPKAQTPGS KTLFVGNLPN LVEDGSFEGS C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322337KKKSDAKAQKKKKKKK
2331337KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785066.10.0PREDICTED: nucleolin 2-like isoform X1
RefseqXP_009785067.10.0PREDICTED: nucleolin 2-like isoform X1
TrEMBLA0A1U7WYS70.0A0A1U7WYS7_NICSY; nucleolin 2-like isoform X1
STRINGXP_009785066.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44810.16e-13DNA-binding storekeeper protein-related transcriptional regulator