PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009785053.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 244aa    MW: 27554.9 Da    PI: 5.684
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009785053.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.7e-1565117155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++ +hn+ Er RR++iNs ++ Lr+llP  +   ++kKls  ++  ++ +YI +Lq
  XP_009785053.1  65 KKLNHNASERDRRKKINSLYSSLRSLLPAsD---HAKKLSIPSTISRVLKYIPELQ 117
                     6789*************************66...9999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.30364116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-1265117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.71E-665121No hitNo description
SuperFamilySSF474599.81E-1665133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1365133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1070122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MLAVSSSNNF GWLLEDPISY ELNMTTSSDS VAALHPSSQT RLLEHCDSKK FDQINNDDQP  60
DQMVKKLNHN ASERDRRKKI NSLYSSLRSL LPASDHAKKL SIPSTISRVL KYIPELQNEV  120
EKLIEKKEDL TSRTISNKEN SADFNKQKRR GGNDSSSLVI SASEVGDKEV VIQISTLKIN  180
KGSFAEAVSD LEDEGLLLLN SSSFETFEDR VFHTLHFQVQ GTMVVELDTL RDKLSSYFQK  240
EDKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785053.11e-178PREDICTED: transcription factor ORG3-like
RefseqXP_016510802.11e-178PREDICTED: transcription factor ORG3-like
TrEMBLA0A1S4DBJ11e-176A0A1S4DBJ1_TOBAC; transcription factor ORG3-like
TrEMBLA0A1U7X2J91e-176A0A1U7X2J9_NICSY; transcription factor ORG3-like
STRINGXP_009785053.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-47bHLH family protein