PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009784722.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 440aa    MW: 48106.4 Da    PI: 7.9891
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009784722.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.47.2e-40612132137
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssasnsss 87 
                      g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a p+i el+++         s        ++++ss++ +++ 
  XP_009784722.1  61 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAAPSISELPSLnafqdtqqiS--------EDKRSSAGTEQGL 147
                     689*************************************************************6554443221........2222222222222 PP

             TCP  88 g...............kaaksaakskksqksaasalnlak.esrakarararertrekmriknkln 137
                     +                + +++a+s+ s++s+ s l+l++ e r kar+rarer +ek + k+k+n
  XP_009784722.1 148 DsaevemdgdpnyqqhVSLSKSACSSTSETSKGSGLSLSRsENRVKARERARERAAEKEKEKEKEN 213
                     24445556666666756666666999999999999*****9*******************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-4062208IPR005333Transcription factor, TCP
PROSITE profilePS5136932.18163121IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.972188207IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEVDEIQKQG CKFPRISNGN GRFESQDENE AVKGSNGLGG GGIGRLCGWP SNRIVRVSRA  60
SGGKDRHSKV WTSKGLRDRR VRLSVNTAIQ FYDLQDRLGY DQPSKAVEWL LKAAAPSISE  120
LPSLNAFQDT QQISEDKRSS AGTEQGLDSA EVEMDGDPNY QQHVSLSKSA CSSTSETSKG  180
SGLSLSRSEN RVKARERARE RAAEKEKEKE KENESTRTAH HQNVHRISQN SSFTELLTGG  240
MNNNITCNGR GSETNLFNKS PRQWSSSSPF DYFPSGLLGL RGNDNSTSGF QAQVHLGNPI  300
QQQPLPVSSP MFSITGDHPP ELQHFPFLSD HLGTNGHASN SANEYNLNFS ISSSSSSGLA  360
GYNRGTLQSN CSSLLPHFQR YEGSQSFFNG STIDAATAPN NTAAASVDNH HHFLSAYDAG  420
RLQLFYNDSR HSDQKGKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-2468122155Putative transcription factor PCF6
5zkt_B9e-2468122155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784722.10.0PREDICTED: transcription factor TCP2-like isoform X1
RefseqXP_009784723.10.0PREDICTED: transcription factor TCP2-like isoform X1
RefseqXP_009784724.10.0PREDICTED: transcription factor TCP2-like isoform X1
TrEMBLA0A1U7WXS30.0A0A1U7WXS3_NICSY; transcription factor TCP2-like isoform X1
STRINGXP_009784722.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.26e-38TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2