PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009784656.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 256aa MW: 27852 Da PI: 8.0958 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.0002 | 102 | 124 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+ksF + L H +H XP_009784656.1 102 YKCSVCNKSFASYQALGGHKASH 124 9***********99998888877 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.00051 | 153 | 175 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F++ L H r+H XP_009784656.1 153 HECSICHKYFPTGQALGGHKRRH 175 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.85E-7 | 101 | 175 | No hit | No description |
SMART | SM00355 | 0.005 | 102 | 124 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.011 | 102 | 129 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.4E-13 | 102 | 125 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 104 | 124 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 153 | 175 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.556 | 153 | 180 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.6E-11 | 153 | 177 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 155 | 175 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MALEALNSPT KEPTPTTPPI CEQVNLDSST KRKRSKRPHN EIQPTEEEFL ALCLIMLARS 60 GGGRTNSTHH DTTAAVQQQK KQIANDPLPR QDQEALIEQH SYKCSVCNKS FASYQALGGH 120 KASHRNKHST TTATTVSDDN YTSTSLNPSG RSHECSICHK YFPTGQALGG HKRRHYEGKI 180 IGGGGGSREA GGSHTVISSE AGGSARTVRD FDLNLPPPPE FSLGLTVDCE GKSQLSSEQE 240 VESPMPTKKP RLFFLD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009784656.1 | 0.0 | PREDICTED: zinc finger protein ZAT6-like isoform X2 | ||||
TrEMBL | A0A1U7X4N9 | 0.0 | A0A1U7X4N9_NICSY; zinc finger protein ZAT6-like isoform X2 | ||||
STRING | XP_009784655.1 | 1e-165 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 1e-41 | salt tolerance zinc finger |