PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009784655.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 289aa    MW: 31014.3 Da    PI: 7.4213
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009784655.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00024102124123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+ksF +   L  H  +H
  XP_009784655.1 102 YKCSVCNKSFASYQALGGHKASH 124
                     9***********99998888877 PP
2zf-C2H212.10.0006153175123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F++   L  H r+H
  XP_009784655.1 153 HECSICHKYFPTGQALGGHKRRH 175
                     78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.65E-7101175No hitNo description
SMARTSM003550.005102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.011102129IPR007087Zinc finger, C2H2
PfamPF139124.0E-13102125IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SMARTSM003550.19153175IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.556153180IPR007087Zinc finger, C2H2
PfamPF139123.0E-11153177IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MALEALNSPT KEPTPTTPPI CEQVNLDSST KRKRSKRPHN EIQPTEEEFL ALCLIMLARS  60
GGGRTNSTHH DTTAAVQQQK KQIANDPLPR QDQEALIEQH SYKCSVCNKS FASYQALGGH  120
KASHRNKHST TTATTVSDDN YTSTSLNPSG RSHECSICHK YFPTGQALGG HKRRHYEGKI  180
IGGGGGSREA GGSHTVISSE AGGSHTLISS EAGGIHTLIS SEAGSSHTVI SSEAGGSART  240
VRDFDLNLPP PPEFSLGLTV DCEGKSQLSS EQEVESPMPT KKPRLFFLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784655.10.0PREDICTED: zinc finger protein ZAT10-like isoform X1
TrEMBLA0A1U7XDX60.0A0A1U7XDX6_NICSY; zinc finger protein ZAT10-like isoform X1
STRINGXP_009784655.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-38salt tolerance zinc finger