PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

XP_009784040.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 280aa MW: 30518 Da PI: 6.3046

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009784040.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	1e-09	164	211	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_009784040.1 164 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 211 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.71E-9	158	215	No hit	No description
SuperFamily	SSF47459	1.96E-17	158	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.8E-18	160	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.459	160	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-7	164	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-10	166	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MDPPIINEAS FSAANPSSYS LAEIWPFSTA ANGGGNGDLG GGGLGLRMSS FTGLLEAAAN 60 SVNESTVTEQ SGRSGGGTAA VRQRDMNSED DSSKLVSTSD ANDLDGSVAK RQKASESKEE 120 NGGSKVEAES SSRTVNKGTE QSSKPEPPKD YIHVRARRGQ ATDSHSLAER ARREKISERM 180 KILQDLVPGC NKVIGKALVL DEIINYVQSL QRQVEFLSMK LEAVNSRMSH PVETFPSKDV 240 SIWFSFSLSQ VAGRWVQVYV DLRQTLYLFY LLILSNFWSR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF022012	2e-65	KF022012.1 Jatropha curcas basic helix-loop-helix protein (bHLH) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009784040.1	0.0	PREDICTED: transcription factor bHLH79 isoform X2
Refseq	XP_016453734.1	0.0	PREDICTED: transcription factor bHLH79-like isoform X2
Swissprot	Q9LV17	4e-74	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A1S3YN91	0.0	A0A1S3YN91_TOBAC; transcription factor bHLH79-like isoform X2
TrEMBL	A0A1U7XC62	0.0	A0A1U7XC62_NICSY; transcription factor bHLH79 isoform X2
STRING	XP_009784039.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	3e-76	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]