PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 186aa MW: 21538.9 Da PI: 9.4437

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009783970.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	7.7e-18	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ ar g++Rt+k+c++rw++yl XP_009783970.1 16 KGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 63 79********************************************97 PP
2	Myb_DNA-binding	55.9	9.8e-18	69	112	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ XP_009783970.1 69 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 112 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-23	8	66	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.77	11	63	IPR017930	Myb domain
SuperFamily	SSF46689	1.17E-30	13	110	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-12	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-16	16	63	IPR001005	SANT/Myb domain
CDD	cd00167	5.17E-10	18	63	No hit	No description
PROSITE profile	PS51294	25.859	64	118	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.4E-25	67	118	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-15	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-16	69	112	IPR001005	SANT/Myb domain
CDD	cd00167	4.34E-12	73	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MDNKRTCNSH DVEVRKGPWT MEEDLILINY IANHGEGVWN SLARSAGLKR TGKSCRLRWL 60 NYLRPDVRRG NITPEEQLLI MELHAKWGNR WSKIAKHLPG RTDNEIKNYW RTRIQKHIKQ 120 ADEGMNIRPS SNSENNHHQQ ASTSQVSTEN NTIETYSPSS YNGNNMGTTN FQANFPAETN 180 ENIWSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-25	13	118	24	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC182627	1e-145	KC182627.1 Petunia x hybrida cultivar W115 EOBI (EOBI) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783970.1	1e-137	PREDICTED: myb-related protein 340-like
Refseq	XP_016500297.1	1e-137	PREDICTED: myb-related protein 305-like
Swissprot	P81391	2e-92	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A1S4CGI8	1e-136	A0A1S4CGI8_TOBAC; myb-related protein 305-like
TrEMBL	A0A1U7XBZ3	1e-136	A0A1U7XBZ3_NICSY; myb-related protein 340-like
STRING	XP_009783970.1	1e-137	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	8e-84	myb domain protein 21

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]