PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

XP_009783878.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 257aa MW: 29509.7 Da PI: 5.7704

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009783878.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.6	9e-18	41	94	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k XP_009783878.1 41 KKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 94 4557899**********************************************9 PP
2	HD-ZIP_I/II	128.9	2.1e-41	40	132	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqvk+LE+sFe +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlE+dye Lkr+yd lk +n++L++++++L++el++ XP_009783878.1 40 EKKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLERDYEILKRQYDVLKFDNDALKAQNKNLHSELQA 132 69***************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.56E-19	36	98	IPR009057	Homeodomain-like
SMART	SM00389	5.8E-17	39	100	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.471	40	96	IPR001356	Homeobox domain
Pfam	PF00046	5.0E-15	41	94	IPR001356	Homeobox domain
CDD	cd00086	1.72E-15	41	97	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-18	43	103	IPR009057	Homeodomain-like
PRINTS	PR00031	1.4E-5	67	76	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	71	94	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.4E-5	76	92	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.8E-15	96	134	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MLMRRSMSFS GVERCDNHQD LRVDDSEMSD DDGSSQLLGE KKRRLNLEQV KALERSFEVA 60 NKLEPERKIQ LARALGLQPR QIAIWFQNRR ARWKTKQLER DYEILKRQYD VLKFDNDALK 120 AQNKNLHSEL QALTLRNRES GGGGAPMINL NKENEGSWSN GSEENNSIDV NIGTTTTTRT 180 SSGDSPFYSN NNKNNVFPES SPIPLAQLFH QSSSRSDLQC HKIDPTVPDD QGFCNMFATP 240 VDDQTNFWPW PEQQQFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	96	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783878.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X2
TrEMBL	A0A1U7WZ45	0.0	A0A1U7WZ45_NICSY; homeobox-leucine zipper protein HAT7-like isoform X2
STRING	XP_009783877.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	1e-55	homeobox 3