PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009783877.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 300aa MW: 34190.9 Da PI: 5.692

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009783877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.2	1.2e-17	84	137	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k XP_009783877.1 84 KKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 137 4557899**********************************************9 PP
2	HD-ZIP_I/II	128.4	2.9e-41	83	175	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqvk+LE+sFe +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlE+dye Lkr+yd lk +n++L++++++L++el++ XP_009783877.1 83 EKKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLERDYEILKRQYDVLKFDNDALKAQNKNLHSELQA 175 69***************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-19	79	141	IPR009057	Homeodomain-like
SMART	SM00389	5.8E-17	82	143	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.471	83	139	IPR001356	Homeobox domain
Pfam	PF00046	6.4E-15	84	137	IPR001356	Homeobox domain
CDD	cd00086	6.19E-16	84	140	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-18	86	146	IPR009057	Homeodomain-like
PRINTS	PR00031	1.8E-5	110	119	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	114	137	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.8E-5	119	135	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.3E-15	139	177	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MAFVPSTPEI SINFQDNHIP STSPKVFPSP CNIPHQDFNG ISSMLMRRSM SFSGVERCDN 60 HQDLRVDDSE MSDDDGSSQL LGEKKRRLNL EQVKALERSF EVANKLEPER KIQLARALGL 120 QPRQIAIWFQ NRRARWKTKQ LERDYEILKR QYDVLKFDND ALKAQNKNLH SELQALTLRN 180 RESGGGGAPM INLNKENEGS WSNGSEENNS IDVNIGTTTT TRTSSGDSPF YSNNNKNNVF 240 PESSPIPLAQ LFHQSSSRSD LQCHKIDPTV PDDQGFCNMF ATPVDDQTNF WPWPEQQQFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	139	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783877.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-13-like isoform X1
TrEMBL	A0A1U7WVF1	0.0	A0A1U7WVF1_NICSY; homeobox-leucine zipper protein ATHB-13-like isoform X1
STRING	XP_009783877.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	9e-58	HD-ZIP family protein