PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009783661.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 560aa MW: 63043.7 Da PI: 5.4927

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009783661.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	67	2.7e-21	124	225	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+kvlt sd++++ l++ ++ a ++ ++k+ + +l+ +d++g +W++ + +r++++r++ltkGW++Fv +++L +gD+v+F + ++ XP_009783661.1 124 FCKVLTASDTNSNWGLTVRREDAIKCfppldiTKQKPIQ-ELIAKDLNGSEWQFCHVFRGQPRRHLLTKGWSKFVASKRLVAGDSVIFL--RGEN 215 99**************************985555564.9********************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+v+r+ XP_009783661.1 216 GELCVGVRRQ 225 99***996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.3E-35	118	238	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-26	119	227	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.84E-21	123	224	No hit	No description
SMART	SM01019	2.4E-17	124	226	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.0E-19	124	225	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.744	124	226	IPR003340	B3 DNA binding domain
Pfam	PF05278	5.2E-7	402	541	IPR007942	Phospholipase-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence Send to blast
MDGEIGSSHH QQENHVLVEG DYMYKELWKA CADPIMDLPK LGERVYYFPM NHMELLKESA 60 DQIIPLFDLP TDILCRVINI QLMVEPDTDE VYAHITLLPE ENQSDQTTPD AWSPQPLNSQ 120 FQSFCKVLTA SDTNSNWGLT VRREDAIKCF PPLDITKQKP IQELIAKDLN GSEWQFCHVF 180 RGQPRRHLLT KGWSKFVASK RLVAGDSVIF LRGENGELCV GVRRQAHRRH NIGSSPVSSQ 240 TVQGVLAVVS HAFATKRLFS VYYQPRKSRF ILSLSKYLEP NREKPSNQDL AQIASNGLST 300 NQASVDVLDC DVFGDIFLAA HPLFLENTPE SNGNCVGVAS TVQNFEGWPE PQRESFTTYP 360 QQPIPEPSAT ISTLQPTDTL QVMCTYSTPR QLPTEGSGFG SEQVSWAGYQ VAQQYVPILS 420 RVIMRYPSTI SGFKAITGAL QSVYLEMLAT LVDLLEKSRI GSMDNRNQFQ VIKQYLADLK 480 FIGIDISWIE TRLAQIDEVL KMEKLIQHQH TLARKIDETQ FTLGQLNQEL GSVRKELEEL 540 TPKVGPSPPS KDCSILEGLL

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence Send to blast

MDGEIGSSHH QQENHVLVEG DYMYKELWKA CADPIMDLPK LGERVYYFPM NHMELLKESA  60
DQIIPLFDLP TDILCRVINI QLMVEPDTDE VYAHITLLPE ENQSDQTTPD AWSPQPLNSQ  120
FQSFCKVLTA SDTNSNWGLT VRREDAIKCF PPLDITKQKP IQELIAKDLN GSEWQFCHVF  180
RGQPRRHLLT KGWSKFVASK RLVAGDSVIF LRGENGELCV GVRRQAHRRH NIGSSPVSSQ  240
TVQGVLAVVS HAFATKRLFS VYYQPRKSRF ILSLSKYLEP NREKPSNQDL AQIASNGLST  300
NQASVDVLDC DVFGDIFLAA HPLFLENTPE SNGNCVGVAS TVQNFEGWPE PQRESFTTYP  360
QQPIPEPSAT ISTLQPTDTL QVMCTYSTPR QLPTEGSGFG SEQVSWAGYQ VAQQYVPILS  420
RVIMRYPSTI SGFKAITGAL QSVYLEMLAT LVDLLEKSRI GSMDNRNQFQ VIKQYLADLK  480
FIGIDISWIE TRLAQIDEVL KMEKLIQHQH TLARKIDETQ FTLGQLNQEL GSVRKELEEL  540
TPKVGPSPPS KDCSILEGLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldv_A	1e-101	5	284	1	287	Auxin response factor 1
4ldw_A	1e-101	5	284	1	287	Auxin response factor 1
4ldw_B	1e-101	5	284	1	287	Auxin response factor 1
4ldx_A	1e-101	5	284	1	287	Auxin response factor 1
4ldx_B	1e-101	5	284	1	287	Auxin response factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269\|PubMed:12036261, ECO:0000269\|PubMed:16176952}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783661.1	0.0	PREDICTED: auxin response factor 1-like
Refseq	XP_016464700.1	0.0	PREDICTED: auxin response factor 1-like isoform X1
Swissprot	Q8L7G0	2e-97	ARFA_ARATH; Auxin response factor 1
TrEMBL	A0A1S3ZJL5	0.0	A0A1S3ZJL5_TOBAC; auxin response factor 1-like isoform X1
TrEMBL	A0A1U7X1W8	0.0	A0A1U7X1W8_NICSY; auxin response factor 1-like
STRING	XP_009783661.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14681	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	1e-100	auxin response factor 1

Publications ? help Back to Top
Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum. Plant J., 2014. 80(6): p. 1014-30 [PMID:25312353] Marais C, et al. The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana. J. Exp. Bot., 2015. 66(21): p. 6665-78 [PMID:26208648] Wójcikowska B,Gaj MD Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]