PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009783501.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 802aa    MW: 89784.7 Da    PI: 6.1912
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009783501.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP115.23.7e-36153229177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cqv++Cead+se+k yh+rh+vC  +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k+
  XP_009783501.1 153 RCQVPDCEADISELKGYHKRHRVCLRCANATAVFLDGQSKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKA 229
                     6*************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.0E-27148215IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.291151228IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-33152232IPR004333Transcription factor, SBP-box
PfamPF031101.1E-26154228IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MHNNQASSPS QTGAPTQFRN TQIMLSGTLD DPTISSSLFD WSDFLEFNLD EEQLNISFDD  60
PLLHPPETET EPAAPLIIPS SEDSPQSQEA DADTGRVRKR DPRMACSNFL AGRIPCACPE  120
LDEKMEEEEL GGIGPGKKRP RTLRASSGAA GARCQVPDCE ADISELKGYH KRHRVCLRCA  180
NATAVFLDGQ SKRYCQQCGK FHILSDFDEG KRSCRRKLER HNNRRRRKAI DSSKMSVEKE  240
SRQVTTADDI SGDDDNVKDS TCTGSQLGER EILLESEGHV PIGSTQGIQN NQSDSFTASG  300
ETQGDAEKEN SKNSLSPSYY DNKSAFSSMC PTGRISFKLY DWNPAEFPRR LRHQIFQWLA  360
SMPVELEGYI RPGCTILTVF VAMPTFKWGK LLEDPAAHLY EFIASPGNML RGRGSFLVYL  420
NNMVFRVTKG ENSVVKVKLK GPAPKLKSIH PTCFEAGKPM EFFACGSNLM QPRFRFLVSF  480
GGRYLGNDIS VTPSCSKNEG GSGSMEHQLL KIHVPRTEAD LFGPAFVEVE NESGLSNFIP  540
ILIAEKDICA EMKEIQRKFC SGGSEHTAVC SPCEDSTCRK SEFSEFMLDV AWLLREPSSE  600
NVQIVASVQM QRFNYLLNVL MESQSTIILK RVLPYFENMV NRNLLAGITD AEMRLFQRNI  660
YEKNNLLKET LQLKEYWTGD AGKIMQEANT SSDIFQNHMK SVFPVNNEDV EVPHEHNLEF  720
GSAYWESTST VPLLDAELAL RVKEQSGKPC GFLVRKTVLT SRTLVFVITG FAVCLGLCAT  780
FLHPRKVGEF AMTIRRCLFD NS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A3e-45152231483squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214226RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0732960.0LC073296.1 Nicotiana tabacum NtabSPL7 mRNA for squamosa promoter binding protein NtabSPL7, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783501.10.0PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A1U7X1G50.0A0A1U7X1G5_NICSY; squamosa promoter-binding-like protein 7
STRINGXP_009783501.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54072433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.20.0squamosa promoter binding protein-like 7