PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009782860.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 560aa MW: 64237.7 Da PI: 5.45

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009782860.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.1	3.1e-20	425	498	1	71
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnk..rykkikegekkr 71 rW++ ev aLi++r+++e+++++ + k+ lWee+s+ m++ gfers+ +Ckekwen++k k++ke+ +++ XP_009782860.1 425 RWPQAEVEALIQIRNSLESKFQEaAGPKGVLWEEISNSMASMGFERSARRCKEKWENMHKcrTVKRTKEITREQ 498 8*******************9356999***************************9833466666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.143	418	483	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.4E-4	420	484	IPR009057	Homeodomain-like
SMART	SM00717	0.0054	422	485	IPR001005	SANT/Myb domain
Pfam	PF13837	1.8E-14	424	485	No hit	No description
CDD	cd12203	3.28E-22	424	484	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence Send to blast
MQSDYEMAGI HQHRNRNQQP QVEQQQQQQQ HRFIMENAST SSPFFPINYS HHYPPQQPNP 60 LLQPFTQQFF QYQHLHYRSI LEQQQHQDIR LELNAEGENH QVQGVSVPFF PLSFKEDSSS 120 KGEREEDALI RGSEGYCNEA RQTSLAVSHC WQNQEDSAIK QPFWKPLCAE FSNGNNNNSN 180 ESEKNKQEED QEMYPDEIHQ QQIIKSLEEN KCRVVFGELE AIYATNAETN TTATTNIHRI 240 ASESVLTAED LPINNNNNVS FPVATCNDSN QTSGPTAIAT TTPGAIDIGS DSASVGEATR 300 EDEVHNKRKR RRKAKEGTSI TMARFFESLV KKLVNHQEDL QKRFMETIER LDQERKEREE 360 TWREQELAKL KKEAAVRAQE RTLASNREAA LVSYLEKLTG QKINFQHGSE PDKSCNSLVK 420 LNNKRWPQAE VEALIQIRNS LESKFQEAAG PKGVLWEEIS NSMASMGFER SARRCKEKWE 480 NMHKCRTVKR TKEITREQLD DGNNSIDFVT QGNDTVDDHL GTVNLTEGNK GNSEKDKHGN 540 GESKNGNWKE EMEEIKEGEI

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence Send to blast

MQSDYEMAGI HQHRNRNQQP QVEQQQQQQQ HRFIMENAST SSPFFPINYS HHYPPQQPNP  60
LLQPFTQQFF QYQHLHYRSI LEQQQHQDIR LELNAEGENH QVQGVSVPFF PLSFKEDSSS  120
KGEREEDALI RGSEGYCNEA RQTSLAVSHC WQNQEDSAIK QPFWKPLCAE FSNGNNNNSN  180
ESEKNKQEED QEMYPDEIHQ QQIIKSLEEN KCRVVFGELE AIYATNAETN TTATTNIHRI  240
ASESVLTAED LPINNNNNVS FPVATCNDSN QTSGPTAIAT TTPGAIDIGS DSASVGEATR  300
EDEVHNKRKR RRKAKEGTSI TMARFFESLV KKLVNHQEDL QKRFMETIER LDQERKEREE  360
TWREQELAKL KKEAAVRAQE RTLASNREAA LVSYLEKLTG QKINFQHGSE PDKSCNSLVK  420
LNNKRWPQAE VEALIQIRNS LESKFQEAAG PKGVLWEEIS NSMASMGFER SARRCKEKWE  480
NMHKCRTVKR TKEITREQLD DGNNSIDFVT QGNDTVDDHL GTVNLTEGNK GNSEKDKHGN  540
GESKNGNWKE EMEEIKEGEI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	306	311	KRKRRR
2	306	312	KRKRRRK
3	307	311	RKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009782860.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
TrEMBL	A0A1U7X8T0	0.0	A0A1U7X8T0_NICSY; trihelix transcription factor GT-2-like
STRING	XP_009782860.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11622	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-33	Trihelix family protein