PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009781965.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 701aa MW: 76775.9 Da PI: 6.5969

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009781965.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.9e-07	280	300	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg XP_009781965.1 280 PCPEFRK-GACRRGDMCEYAHG 300 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	5.3E-20	15	162	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	8.55E-19	20	141	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	5.7E-11	54	128	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	19.465	59	162	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.85E-17	59	141	No hit	No description
SMART	SM00248	0.0031	59	89	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	13.117	94	129	IPR002110	Ankyrin repeat
SMART	SM00248	7.0E-4	94	126	IPR002110	Ankyrin repeat
PRINTS	PR01415	1.7E-5	95	110	IPR002110	Ankyrin repeat
PRINTS	PR01415	1.7E-5	113	127	IPR002110	Ankyrin repeat
SMART	SM00248	2500	130	165	IPR002110	Ankyrin repeat
SMART	SM00356	9.5E-6	275	301	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.981	280	302	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-4	280	300	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-4	308	338	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	37	310	333	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MNMNHLTVET EDTFASLLEF AANNDIEAFK SWMERDISGI HEVGLWYGRQ KGSKQMVLEH 60 RTPLMVAAMY GSVDVLKLIL SLPGVDVNHS CGRDNSTALH FAASGGSLNA VDAVKLLVEA 120 GADPNIKNTN GHRPLDVIVI SPKFHTMTSC LENLLKTDAT EDCNLRVSMA TSSSNSPPLS 180 PSPGNRSPSS ASDTTSSPRS AKSSDLPVPF TSEKKEYPID PSMPDIKNSI YSTDEFRMFS 240 FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACR RGDMCEYAHG 300 VFECWLHPAQ YRTRLCKDGT NCDRRVCFFA HTQEELRPLY VSAGSAVPSP RSNTSAANAL 360 DFAAAMGLIP GSPSSVSVMP PSPFTPPMSP SANGISNIGW PQQNVPALHL PGSNLQSSRL 420 RSSLNARDIP AEDLTMLSDF DVQQKQLLYE LSCLSHSSMN ANSFSHSVRP RTLTPSNLED 480 SFSAESSSPR YSDHSLPQAV FSPTHKSIGF NQFQQQQATL SPINTRFSPK TVESPLLQGS 540 FGVPPMRNMS PRGMEPISPM SSRASILAQS DKQQQFRSLS SRDLGSSASA IVGSPADSWS 600 NWGTAMGKPD WAVNTEEFGR LRRSSSFELA NSGEEPDLSW VQSLVKESPQ EVKDESASRV 660 SGLTNPGADI REASTSSSQN GQFDQLGAWM EQMKLDQLVP Q

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MNMNHLTVET EDTFASLLEF AANNDIEAFK SWMERDISGI HEVGLWYGRQ KGSKQMVLEH  60
RTPLMVAAMY GSVDVLKLIL SLPGVDVNHS CGRDNSTALH FAASGGSLNA VDAVKLLVEA  120
GADPNIKNTN GHRPLDVIVI SPKFHTMTSC LENLLKTDAT EDCNLRVSMA TSSSNSPPLS  180
PSPGNRSPSS ASDTTSSPRS AKSSDLPVPF TSEKKEYPID PSMPDIKNSI YSTDEFRMFS  240
FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACR RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT NCDRRVCFFA HTQEELRPLY VSAGSAVPSP RSNTSAANAL  360
DFAAAMGLIP GSPSSVSVMP PSPFTPPMSP SANGISNIGW PQQNVPALHL PGSNLQSSRL  420
RSSLNARDIP AEDLTMLSDF DVQQKQLLYE LSCLSHSSMN ANSFSHSVRP RTLTPSNLED  480
SFSAESSSPR YSDHSLPQAV FSPTHKSIGF NQFQQQQATL SPINTRFSPK TVESPLLQGS  540
FGVPPMRNMS PRGMEPISPM SSRASILAQS DKQQQFRSLS SRDLGSSASA IVGSPADSWS  600
NWGTAMGKPD WAVNTEEFGR LRRSSSFELA NSGEEPDLSW VQSLVKESPQ EVKDESASRV  660
SGLTNPGADI REASTSSSQN GQFDQLGAWM EQMKLDQLVP Q

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009781965.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A1U7X668	0.0	A0A1U7X668_NICSY; zinc finger CCCH domain-containing protein 30-like
STRING	XP_009781965.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]