PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781959.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 616aa    MW: 71791 Da    PI: 6.6424
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.92.5e-11138216291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fY+e+A+  GFsv+k++s+k+   ++    t++C +   r+ + ++          +  + ka+l   ++++g w+v+k++++HnH+l p
  XP_009781959.1 138 FYKEHARLKGFSVVKRNSNKK-GGDTARYITYCCDRARIRKIKVTT----------KSNNYKARLAAILDDSGCWRVSKVVHDHNHDLLP 216
                     9***************99998.55558899*********9998777..........4455689999999******************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-9138216IPR004330FAR1 DNA binding domain
PfamPF105513.0E-30336427IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MDSNQENLAV QQNMNRNEHN TNTTTISINQ DNRFDRVRDE LYRSLGMASD DSLLNEYEWV  60
DVDSHGSFNN VVHLDDDDDE ADGEYHGEAS DDEEQVLGNE LELCDVDREM ENEFTKEDVV  120
VGPISGMRFR DKDTLFAFYK EHARLKGFSV VKRNSNKKGG DTARYITYCC DRARIRKIKV  180
TTKSNNYKAR LAAILDDSGC WRVSKVVHDH NHDLLPSVSR PMAGHRSVCD SLKRDLVAHD  240
QSGIRPSKNR LAEVQCGGPQ NLGCTPKDCR NSILKSRNFE MQEGDAQSLL NFFREIQVKD  300
REFFYSIDVD YIGRLRNVVW VHSHCKAAYE QFYDAICFDT TYLVNRYNMP CATFVGINHH  360
RQSILLGCAL MSHEDIDSYK LVFRTWLDAM GNVHPDAITT DQCQSIKIAI AEMMPNTIHR  420
YCIWHIFSKL PLYVSGVRPS KIARGEFKSM VLDSIIVDVF ERKWTEYIVR YNLHTRNWFN  480
KLYSKKEKWV PVYLDVHFWA GMLSTQRSEG LHAFFDGYIT RQSTFMMFVH QYKLAIRAKN  540
EKELEAEYRS KGFQIVCESM FKWEEQAIQC YTRTVYEFFK TELRKLYHCE VSSPDDHQVV  600
PGVEKFIVSD YSVIKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781959.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1U7X4Z50.0A0A1U7X4Z5_NICSY; protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_009781959.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.14e-82FAR1 family protein