PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781871.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 265aa    MW: 29732 Da    PI: 8.4436
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.4e-08326226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k++lC+ffar G C  G+ C F H+
  XP_009781871.1  3 KRVLCKFFAR-GACLKGEHCDFLHD 26
                    99********.*************6 PP
2zf-CCCH23.21.2e-073454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C ++++ G+C +G+rC++ H+
  XP_009781871.1 34 VCTYYQK-GICAFGSRCRYEHV 54
                    5******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.3E-5127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.328128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-7326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-6329IPR000571Zinc finger, CCCH-type
PfamPF156631.9E-7765No hitNo description
PROSITE profilePS5010313.312956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-53153IPR000571Zinc finger, CCCH-type
SMARTSM003560.00223155IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.92E-12115186No hitNo description
Gene3DG3DSA:3.30.40.101.4E-9115181IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00512121181No hitNo description
PROSITE profilePS5008912.268122180IPR001841Zinc finger, RING-type
SMARTSM001849.6E-7122179IPR001841Zinc finger, RING-type
PfamPF000973.3E-7122179IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180146155IPR017907Zinc finger, RING-type, conserved site
SMARTSM0035620209237IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.038209238IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSKRVLCKFF ARGACLKGEH CDFLHDSEDV PNNVCTYYQK GICAFGSRCR YEHVKITRSQ  60
PSLPSSSANI VELKRVNATD QSICSSSTAS NCPQGKKEEH MKTCETRENQ LDLLKHSQEI  120
ECGVCLERVL SKTIMAERKF GILSECDHPF CISCIRNWRS SSPSIGMNVN STLRACPVCR  180
KLSYFVIPSV IWYSTKEEKQ EIINSYKAKL RSIDCKNFDF GNGTCQFGAS CFYKKTSLLS  240
YSTLSSQAQS YGILPSCPTY VAQAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781871.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X3
RefseqXP_016512831.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X3
SwissprotE0X9N41e-103C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1S4DHK10.0A0A1S4DHK1_TOBAC; E3 ubiquitin-protein ligase makorin-like isoform X3
TrEMBLA0A1U7WX430.0A0A1U7WX43_NICSY; zinc finger CCCH domain-containing protein 69-like isoform X3
STRINGXP_009781754.11e-175(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-103C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]