PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781490.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 422aa    MW: 48281.4 Da    PI: 7.1778
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781490.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.2e-1110663599
                    EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    + ++  + g++W vk+  +     y +++GW eF+++n L+ gD++vF+++g+ ef   v +f++
  XP_009781490.1 10 EHVVLRRAGKKWLVKV--ND----YQFKTGWGEFAEENVLQLGDMLVFRHEGNVEF--EVIIFDS 66
                    45677889********..55....559**********************9998777..7777775 PP
2B351.42e-16166245588
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     +++++ l+ g l+lp +fa++ ++k ++  +l ++de+ rsW+vkl+ + +++r+ +++GW+eF  +n Lk+g+ ++F+++++ 
  XP_009781490.1 166 TIRPYCLTYGYLRLPQQFANSLSNK-KC--DLFIRDERQRSWNVKLS-SDCKNRVSIGDGWREFIADNCLKVGERIMFEVVSDG 245
                     5678999999*********888644.35..7***************5.788889*************************87653 PP
3B362.85.3e-20324403587
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     ++++++ ++ rl+lp +fa+++g+ +++  +++l+de+ rsW+v+l    ++ ++ +t+GWk+Fvkan++++gD++ F+l+++
  XP_009781490.1 324 TIKPYSINKPRLYLPADFAKSNGLMNRR-CEMILTDEKQRSWSVQL--GLTGHHVAITRGWKKFVKANDVQVGDTFKFELINN 403
                     5688999999************887655.59***************..88888899***********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.562167IPR003340B3 DNA binding domain
CDDcd100179.71E-12265No hitNo description
SuperFamilySSF1019362.55E-13369IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.078367IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.2E-14980IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-8965IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-18158247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-16159247IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.1E-10162255IPR003340B3 DNA binding domain
PROSITE profilePS5086312.055162259IPR003340B3 DNA binding domain
PfamPF023621.5E-14166246IPR003340B3 DNA binding domain
CDDcd100171.96E-11175240No hitNo description
Gene3DG3DSA:2.40.330.106.0E-23314411IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-22315411IPR015300DNA-binding pseudobarrel domain
CDDcd100173.10E-20319413No hitNo description
PROSITE profilePS5086314.353320414IPR003340B3 DNA binding domain
SMARTSM010191.4E-19321418IPR003340B3 DNA binding domain
PfamPF023622.5E-18324403IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MKYLKGHELE HVVLRRAGKK WLVKVNDYQF KTGWGEFAEE NVLQLGDMLV FRHEGNVEFE  60
VIIFDSSQCD REYAEYLQEE EEAATRTFGE ISKNFEFEDT NNYTSIPSGD RLYGSLPSTS  120
CPLSHSRAID DVIEIPSLNI KSSDEDSSHA EAATDKHAGH SHFICTIRPY CLTYGYLRLP  180
QQFANSLSNK KCDLFIRDER QRSWNVKLSS DCKNRVSIGD GWREFIADNC LKVGERIMFE  240
VVSDGKMESI WKFHVVTDAE TPKQKFQDLR ANASLQPEGK KPDLDANRYY ARGLRIETSD  300
MTAPKAQVHA STSANNANPH FISTIKPYSI NKPRLYLPAD FAKSNGLMNR RCEMILTDEK  360
QRSWSVQLGL TGHHVAITRG WKKFVKANDV QVGDTFKFEL INNGTIPIAY FHCLFATTRR  420
FA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781490.10.0PREDICTED: putative B3 domain-containing protein REM15 isoform X1
TrEMBLA0A1U7X4U90.0A0A1U7X4U9_NICSY; putative B3 domain-containing protein REM15 isoform X1
STRINGXP_009781490.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.13e-23B3 family protein