 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009781411.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
MYB |
| Protein Properties |
Length: 459aa MW: 51397 Da PI: 6.9836 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009781411.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 50.5 | 4.8e-16 | 121 | 166 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ed +l+++v+ +G+ +W++Ia+++ gR++k+c++rw++
XP_009781411.1 121 RGHWRPAEDAKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 166
899*****************************.***********996 PP
|
| 2 | Myb_DNA-binding | 56 | 8.9e-18 | 173 | 216 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
r ++T+eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+
XP_009781411.1 173 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 216
678*******************.*********.***********96 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 459 aa
Download sequence Send
to blast |
MSLSSSTSSS CSPMSSTSMG MFFADMNSLS ITPKNYSITS HDNESSKTRG SWDFQFLNKE 60
AFSQSLDEAE TSEENNETID LNASCFNEEK QITMHSSTIF NSSSNIGKEI TESGQSKLCA 120
RGHWRPAEDA KLKELVAIYG PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR INRRAFTEEE 180
EERLMAAHRL YGNKWAMIAR LFPGRTDNAV KNHWHVIMAR KYREQSSAHR RRKMGQFVYR 240
RTTLEEDSNS SLFVSSSKEV AEVAMKGETQ TPIISVGQNS ANPFGSLKIN NDGPNGWFVY 300
GPNGSPHWAA SVGEAIPSTK TNVPLLSSYS PFCAPFDTLP GQCGNEEMNI LNQQGRSWER 360
QREASNISHN IISHHHHSLT PSNSLMMMNS MQQSQYLQFP YSNFSNVTTA RAQTPSQVTV 420
KEDRRTSSNS SSDNNSQCDQ CETIAPPPPF IDFLGVGAT
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG983331 | 0.0 | HG983331.1 Nicotiana benthamiana mRNA for SANT/HTH Myb transcription factor (SANT/HTH Myb gene), clone 3890. |
