PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781397.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 535aa    MW: 59593 Da    PI: 8.3563
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781397.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.6e-1817981198
                    HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     +s  l +p kf+++++g    s t  l  +sg+sW + l   +++++ ++ +GW +Fvk++ L++gD +vF++dg+  f   v +f+
  XP_009781397.1 17 IQSETLKIPSKFIKHMEGR--ASGTAFLVGPSGNSWPMDL--IQQDDGLFFHNGWASFVKDHCLESGDALVFRYDGDLHF--AVLAFD 98
                    556789*******777777..4459***************..99999***************************997555..677666 PP
2B357.52.5e-18232326198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f kv+++ +v+ s  l +p +fa+eh   +++++++ l +++g++W+v+ i  ++ + ++++ +GW +Fv++n+++ gD+++F+l+++ e  l+v
  XP_009781397.1 232 FMKVMKRFNVSGSYTLNIPYQFATEHL--PKCKVKILLHNLKGKTWTVNSIPtTRVQTSHTFCGGWLSFVRDNNIDLGDICIFELVHKCE--LRV 322
                     889999999*****************6..34999****************77566666699***********************998554..588 PP

                     EEE- CS
              B3  95 kvfr 98 
                     +v+r
  XP_009781397.1 323 HVLR 326
                     8877 PP
3B348.71.4e-154275091297
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      s  l +p +f  eh   +++ ++++l++++g+ W+v+ i + k ++ +++ +GW+ Fv++n+++ gD+++F+l+g  + e++v+++
  XP_009781397.1 427 GSYTLKVPYQFSMEHL--PNCRTEIVLRNLKGECWTVNSIPTMKVQTlHTFCGGWSAFVRDNDIQMGDICIFELVG--KYEMRVHIC 509
                     5567899****99996..45889****************8888887789999*********************998..566688887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-243102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-233101IPR015300DNA-binding pseudobarrel domain
CDDcd100176.63E-17798No hitNo description
PROSITE profilePS5086313.9727100IPR003340B3 DNA binding domain
SMARTSM010191.8E-129100IPR003340B3 DNA binding domain
PfamPF023622.2E-151698IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-23224326IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-24225327IPR015300DNA-binding pseudobarrel domain
CDDcd100172.62E-20230326No hitNo description
PfamPF023625.3E-16232326IPR003340B3 DNA binding domain
PROSITE profilePS5086313.803232328IPR003340B3 DNA binding domain
SMARTSM010194.7E-16232328IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-24411509IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-23411509IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-19414509No hitNo description
PROSITE profilePS5086312.717416512IPR003340B3 DNA binding domain
SMARTSM010192.7E-11416512IPR003340B3 DNA binding domain
PfamPF023625.3E-13419509IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MWDAKRPHFL VGFNPSIQSE TLKIPSKFIK HMEGRASGTA FLVGPSGNSW PMDLIQQDDG  60
LFFHNGWASF VKDHCLESGD ALVFRYDGDL HFAVLAFDES SCEKEAAYNA DCSQGATNLY  120
NLALKKRDRG NSALLDCIVE GVPKKMRSTQ SPSECTAEDA VCSNGRSYAS SFLNEIENAG  180
NASNNTVTIA VPSQTEIVCS NPGNGTSEEP MWLSAQEAEK VARSFTSSFP NFMKVMKRFN  240
VSGSYTLNIP YQFATEHLPK CKVKILLHNL KGKTWTVNSI PTTRVQTSHT FCGGWLSFVR  300
DNNIDLGDIC IFELVHKCEL RVHVLRVEKE GNDYSSKQVA KAKTYDKRGS AHGKEKHGNM  360
LKSHQLHLSK ICSGDSVIRK PAQVKQGSFT KSCMSMKSVP EEKLAAESFI SNFPHFVRIM  420
KKFNISGSYT LKVPYQFSME HLPNCRTEIV LRNLKGECWT VNSIPTMKVQ TLHTFCGGWS  480
AFVRDNDIQM GDICIFELVG KYEMRVHICA IGKKGLDYRN GITSNESAIL ASLTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145241e-137CU914524.3 S.lycopersicum DNA sequence from clone LE_HBa-107D6 on chromosome 4, complete sequence.
GenBankHG9754431e-137HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755161e-137HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781397.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X3
TrEMBLA0A1U7WN720.0A0A1U7WN72_NICSY; B3 domain-containing protein Os01g0723500-like isoform X3
STRINGXP_009781392.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-21B3 family protein