PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009780883.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 319aa    MW: 36443 Da    PI: 6.0201
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009780883.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.22.4e-091985268
        trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68
                    Wt +e l+L++  ++++ + +++ +  ++W++  +++ + g++rs +qCk++we +   y k+k +e
  XP_009780883.1 19 WTLHESLTLVNEMKSTQIECGNTLASFQKWQSTVQNCNSLGVNRSLNQCKKRWEFILENYNKVKPWE 85
                    ****************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-71885No hitNo description
PROSITE profilePS500906.3881975IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MERGDGGSLR TRSQAAPDWT LHESLTLVNE MKSTQIECGN TLASFQKWQS TVQNCNSLGV  60
NRSLNQCKKR WEFILENYNK VKPWETVYWT ASFDGVRKSE LGLPEQFDFE LFNAVGRYLS  120
LLHGEDGGGA ETDPDSDPET QQAQGNNAFL ELGHKRQRRR TKPRKYKMEE RLNPWRRILN  180
ENRKYEQSMV GIKHEASIET KVEAPSYEKS SLQIKREISS PEEKVEPPNL SMVNMVKAEQ  240
INVDNPEEMM AATLRENAEL ITAIIEGNPM DDRDCRLADL KNSEAGRVHL IRSQGNQLID  300
CLGKISDTLS QLCDTIHKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780883.10.0PREDICTED: uncharacterized protein LOC104229866
TrEMBLA0A1U7WQM30.0A0A1U7WQM3_NICSY; uncharacterized protein LOC104229866
STRINGXP_009780883.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83602124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-47sequence-specific DNA binding transcription factors