![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009780873.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 1019aa MW: 113151 Da PI: 7.6105 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 18.8 | 2.8e-06 | 66 | 122 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + ++++e +e+++ g+t +qV+ +F +R++ +k XP_009780873.1 66 KRPRDLLNPKAIKYMQSVFSIKDSINKKETREISALFGVTVTQVRDFFTAQRTRVRK 122 799***************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.232 | 63 | 123 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0025 | 65 | 127 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-6 | 65 | 125 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.3E-5 | 66 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.06E-4 | 66 | 122 | No hit | No description |
Gene3D | G3DSA:1.20.930.10 | 8.4E-4 | 225 | 315 | IPR017923 | Transcription factor IIS, N-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1019 aa Download sequence Send to blast |
MENQLQLALL SSPTASFMTL FDSQKELLRN QIDQLENIVL RQCNLTGVNP LSQEMAAGAL 60 SIKIGKRPRD LLNPKAIKYM QSVFSIKDSI NKKETREISA LFGVTVTQVR DFFTAQRTRV 120 RKFLRLSREK ASISNASIEG PCPIPLSSES DPSSQTEPVP LDSVAPTCTE EGPSCSTQDD 180 VLTGIEETDK HFLDNILTLM RKEETFSGQV KLMDWILEVQ NPSVLFWFLA KGGVMILATW 240 LSQAAVEEQT SVLNIILKVL CHLPLHKAFP VHMSAILQSV NRLRFYRTPD ISNRARILLA 300 KWSKMFAKSQ AMKKRNGIKS ASDVQDELLL QQSIGEVMGD EIWNSKAEDV GESHANLCGP 360 SEYSRKLDSS HPVKLLTASS DDSTKRLNKG ALASKTRERR KVQLMEQPSQ RTTGRSLAVG 420 RPATATQGRP LSADDIQKAK MRAQFMQSKY GKAKNDESSR VKAEAPNGVT TPQDDILQGD 480 PKLLGCPKDD EHEKLDSVAL KGFKQQESHR KLSFDVEEPP WKRCRRMQIP WCKPPEVKMS 540 DAWKVCDGGE SKEVDIQNNR IRRERETIYR TVQEIPLNPK EPWDREMDPD DTLTTEIPIE 600 QLPDAEGAET VVLRPEDEET EAASASTSNG IATTAEPDVE LLAVLLKNPE LVYALTSGQA 660 GNLSSEETVK LLDMIKANGM NSLSSVTDLG RTAEKKVEVS LPSPTPSSDP GTSGSMQGFA 720 KNPFSQRSLM AVPEANGATQ LAVLVRSQEK LQTSSSIYPQ STSSTMLAPQ QLPIAPQLAQ 780 QLSLLQAAAG SFGKDHRLSP LNPNLNQTVL ANPMHSQLSA SEPAVNRNNY SPFGLTEYNL 840 HSATASAATT RIQGQTSGNI RSSPMPIANV QERTISLHMP QMAVSHTPPR PQLQTQPRPG 900 YAPEHMWGTM SGSTLNRGYQ ENSIPNHYNT RLAGHGEPGL QQAAWRGNYV EEAGFESWSP 960 DNSPVRRQEQ LGRWNHSEPR MNMRENYRSD WSTLRNPSYY SGYHGPDDGG NRRWGDRRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780873.1 | 0.0 | PREDICTED: homeobox protein LUMINIDEPENDENS | ||||
Swissprot | Q38796 | 1e-162 | LUMI_ARATH; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | A0A1U7WQL2 | 0.0 | A0A1U7WQL2_NICSY; homeobox protein LUMINIDEPENDENS | ||||
STRING | XP_009780873.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5240 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G02560.2 | 1e-164 | HB-other family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|