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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009780702.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 355aa MW: 38306.4 Da PI: 9.7042 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.1 | 8e-38 | 71 | 131 | 3 | 63 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 e+ +kcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+sss XP_009780702.1 71 EAVQKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSSS 131 56789****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-32 | 54 | 123 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.5E-32 | 73 | 128 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.994 | 74 | 128 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 76 | 112 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MVFSSISAYL DPANWQQQAG HSIPNPQFQS VQPPRPLAAP PPVQTYVGGG GTIRPGSMAD 60 RARLANIPMA EAVQKCPRCE STNTKFCYFN NYSLSQPRHF CKTCRRYWTR GGALRSVPVG 120 GGCRRNKRSS SSTKATNNNN NTPKSPGSST STGGCRQIAT NSGSTSNNNN SFSSPSSAAS 180 LLGLMSPQIH HPLRFMSPLG QLTDHHFTPN NDNNITMNYS AISSSSAPVA GTNENMSFQL 240 GMGGNLEQWR LQQQVANQFP NFYGGLDSSS ASGLYPFHPA YYTSNDAGGV TVTSSQIRPK 300 ITNPMLTQLA LMKMEDNHEH SSLSRQFVGN ENWSNGSAWN ELSASFSSSS TSNAL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00295 | DAP | Transfer from AT2G37590 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780702.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.4-like | ||||
Refseq | XP_016473568.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.4-like | ||||
TrEMBL | A0A1S4AA97 | 0.0 | A0A1S4AA97_TOBAC; dof zinc finger protein DOF2.4-like | ||||
TrEMBL | A0A1U7WL54 | 0.0 | A0A1U7WL54_NICSY; dof zinc finger protein DOF2.4-like | ||||
STRING | XP_009780702.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1917 | 24 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 8e-45 | DNA binding with one finger 2.4 |