PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009780420.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 284aa MW: 32135.9 Da PI: 6.4989

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009780420.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	108	4.9e-34	37	93	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + lkcprC s ntkfCyynny+ sqPr++Ck+C+r+Wt+GG+lrnvPvGggr++++ XP_009780420.1 37 PEPLKCPRCGSINTKFCYYNNYNKSQPRHYCKGCKRHWTEGGTLRNVPVGGGRKNKR 93 6789***********************************************977665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-23	33	93	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-30	39	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.757	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MGLSTKLVSF DDHGLDNWSQ NSLPEPPSTR RQPTPKPEPL KCPRCGSINT KFCYYNNYNK 60 SQPRHYCKGC KRHWTEGGTL RNVPVGGGRK NKRLRPTDPV DHITRMECVT LEVKDQRCPL 120 ISTTVPSSTI RGNVTTNDEE KKESDIFYQT LNFPSTSLQF DHTISSFSKK PFSGNYNDIF 180 AGLKLDGNTH FSFSYDTVPC SLSTQTSNIC NEYMGKFDST VEESSITTVM PITGSSDLLS 240 QPWKIPETSN NITENMSSYW NWNEIDTLCT ADLNIAWDDL EIKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780420.1	0.0	PREDICTED: dof zinc finger protein PBF-like
TrEMBL	A0A1U7X1S1	0.0	A0A1U7X1S1_NICSY; dof zinc finger protein PBF-like
STRING	XP_009780420.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6171	20	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38000.1	4e-28	DNA binding with one finger 4.7