PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 238aa MW: 26217.1 Da PI: 4.7629

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009780384.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.5	7.7e-19	55	106	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr ++ +g+Wv+eIr p++ + r++lg++ t+e+Aa+a++ a+++++ge XP_009780384.1 55 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTYPTPEMAARAHDVAALSIKGE 106 68***998.******843...6**********************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.7E-13	55	106	IPR001471	AP2/ERF domain
SMART	SM00380	4.8E-37	56	119	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.5E-31	56	114	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.83E-21	56	114	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.288	56	113	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.2E-10	57	68	IPR001471	AP2/ERF domain
CDD	cd00018	8.11E-31	57	113	No hit	No description
PRINTS	PR00367	5.2E-10	79	95	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MAEFGVEPSS FSSNYTNNMV LDSSNKSKTE EPEEKRRIKR TRDQYFNSTE NRAYPVYRGV 60 RMRSWGKWVS EIRQPRKKSR IWLGTYPTPE MAARAHDVAA LSIKGESAIL NFPQLVESLP 120 RPASVSPTDV QAAAAKAAAM ENVLNSASSS SSSSSSALTS VSTSMETTAA SEELLGQIIE 180 LPSLEGTFDS DELKLRDSAD GWVYPPLPWG AFDGEFCGYS FEQTAIGESL ISTTDWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-17	57	114	15	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN125862	5e-78	JN125862.1 Solanum tuberosum dehydration-responsive element-binding protein DREB1 (DREB1) mRNA, complete cds.
GenBank	JX428803	5e-78	JX428803.1 Solanum tuberosum AP2 c4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780384.1	1e-175	PREDICTED: dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	6e-59	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A1U7X0H8	1e-174	A0A1U7X0H8_NICSY; dehydration-responsive element-binding protein 3-like
STRING	XP_009780384.1	1e-174	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	2e-55	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]