PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009780218.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 437aa    MW: 49340.3 Da    PI: 6.7529
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009780218.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000321638123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C  C++ Fs+   L  H+r+H
  XP_009780218.1 16 HYCRVCKRGFSSAGALGGHMRSH 38
                    68********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.1E-51538IPR007087Zinc finger, C2H2
SuperFamilySSF576672.72E-61638No hitNo description
PROSITE profilePS501579.4111638IPR007087Zinc finger, C2H2
SMARTSM003550.0251638IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SuperFamilySSF576672.72E-6186213No hitNo description
PfamPF139121.5E-6191215IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681191218IPR007087Zinc finger, C2H2
SMARTSM003550.87191213IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280193213IPR007087Zinc finger, C2H2
SuperFamilySSF576674.82E-5272299No hitNo description
PfamPF139124.4E-12274298IPR007087Zinc finger, C2H2
SMARTSM003550.29275297IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307275297IPR007087Zinc finger, C2H2
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MVDNSKKNET ISSVVHYCRV CKRGFSSAGA LGGHMRSHGV GDTNRNYGED ISEQRFMINN  60
NFRRDNKQEG QKHSYNLRAN SNRLFGNRAS EDRDRKSSMW PPNDRGKYVT DETLTLSPMS  120
SPGSSDVERN VLSYNAKSEY YGHDKDQCDL REDEDEDLAN CLVMLSNKSY DLSDNNKEVK  180
NKAKEVEKGL FQCKACMKIF NSHQALGGHR ASHKKVKGCY AAKLDDNNNN NNNDTDIDED  240
SISPTDLILH QESNSFQSHF PSSSGSFSRK RSRVHQCSIC HRVFSSGQAL GGHKRCHWLT  300
SSLPETTFIP TFQEIQYHNQ EQLFNKPMFT NSDQPLDLNF PAQLGNAAEV GQQLHNPFEH  360
EGPRSYLQLW TDQEVDTNNL NLSLNQKSKV STEDLSREEN YKAKEAKLSN LKDVNLDGGS  420
SWLQVGIGPT PDIVATL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780218.10.0PREDICTED: zinc finger protein ZAT9
TrEMBLA0A1U7WNQ40.0A0A1U7WNQ4_NICSY; zinc finger protein ZAT9
STRINGXP_009780218.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-22C2H2-like zinc finger protein