PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009780129.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 210aa MW: 23767.9 Da PI: 8.8281 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.3 | 3e-21 | 15 | 62 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+n++n qvtfskR+ng++KKA+EL++L +aeva++ fs+ +k+y + XP_009780129.1 15 KIQNERNLQVTFSKRQNGLFKKASELCTLSGAEVALVGFSPGNKVYSF 62 599*******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.175 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-27 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.11E-25 | 7 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.10E-31 | 7 | 79 | No hit | No description |
PRINTS | PR00404 | 6.6E-17 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-23 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-17 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-17 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGRKSNGRKK VDMVKIQNER NLQVTFSKRQ NGLFKKASEL CTLSGAEVAL VGFSPGNKVY 60 SFGHPSVDLV IDRFLTENSQ PNIDVPNHLI EAHRNANVRE INMDELIDKV GTLEMERNRG 120 KALQRTWRDA TPDERWWKAP IENLNFFQLR EVAEAMEMTK KQCEIEAEHQ QKVHGIAFPY 180 RTLGSALAPY GGARESSSNG SYARPSEFCG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1c7u_A | 2e-16 | 7 | 82 | 1 | 75 | MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM |
1c7u_B | 2e-16 | 7 | 82 | 1 | 75 | MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780129.1 | 1e-158 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_016436587.1 | 1e-158 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S3X9K3 | 1e-157 | A0A1S3X9K3_TOBAC; agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1U7WZS5 | 1e-157 | A0A1U7WZS5_NICSY; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_009780129.1 | 1e-158 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-45 | AGAMOUS-like 62 |