PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009780081.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 313aa    MW: 35905.9 Da    PI: 7.8479
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009780081.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.5e-063660123
                    EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                    ++C+  dC  s++rk++L+rH+  H
  XP_009780081.1 36 FVCHidDCQSSYRRKDHLTRHLLQH 60
                    89*******************9887 PP
2zf-C2H214.79.2e-056590123
                    EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                    ++Cp   C++ Fs + n++rH +  H
  XP_009780081.1 65 FECPvdGCKRAFSIQGNMTRHVKEmH 90
                    89********************9988 PP
3zf-C2H2171.6e-05104128123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+C    Cgk+F+  s Lk+H  +H
  XP_009780081.1 104 YVCAepCCGKVFKFASKLKKHEDSH 128
                     899999***************9888 PP
4zf-C2H218.84.5e-06195219223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     kC+  dC  +Fs+ksnL +H +  H
  XP_009780081.1 195 KCEfqDCQHTFSTKSNLIQHVKAvH 219
                     79999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355110728IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-101862IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.28E-71862No hitNo description
SMARTSM003550.0273660IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.4113665IPR007087Zinc finger, C2H2
PROSITE patternPS0002803860IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-56391IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.58E-66391No hitNo description
SMARTSM003550.00146590IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1596595IPR007087Zinc finger, C2H2
PROSITE patternPS0002806790IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.8E-798128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.8104128IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741104133IPR007087Zinc finger, C2H2
PROSITE patternPS000280106128IPR007087Zinc finger, C2H2
SMARTSM0035511136161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138161IPR007087Zinc finger, C2H2
SMARTSM00355170164185IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.07E-10176232No hitNo description
PROSITE profilePS5015713.547194224IPR007087Zinc finger, C2H2
SMARTSM003550.0011194219IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-6195221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280196219IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-5222247IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.5225251IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280227251IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MWCEPSEACS FEAAYAESAH LKQHMQSHSL EIERPFVCHI DDCQSSYRRK DHLTRHLLQH  60
QGKLFECPVD GCKRAFSIQG NMTRHVKEMH DQHASPEASL PKQYVCAEPC CGKVFKFASK  120
LKKHEDSHVK LETMEALCLE PGCMKHFTDE KCLKEHVESC HQHVVCEICG TKQLKKNIKR  180
HLLPHEGEST SERIKCEFQD CQHTFSTKSN LIQHVKAVHL GDKPFSCSIA GCGMKFAFKH  240
VRDRHEKSGC HVYTPGDFVE ADEQFRSRPR GGRKRKLPVF EAIMRKRIAP PCGLXQGSEY  300
LSWLLSAESD EEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-14915615155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-14915615155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267275RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0986000.0KX098600.1 Nicotiana benthamiana transcription factor IIIA 9ZF mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780081.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor IIIA-like
SwissprotQ84MZ41e-100TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1U7WRZ90.0A0A1U7WRZ9_NICSY; LOW QUALITY PROTEIN: transcription factor IIIA-like
STRINGXP_009780081.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-103transcription factor IIIA