PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009779323.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 730aa MW: 81987 Da PI: 7.8442

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009779323.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.3e-12	71	123	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er+RR+++N +++Lr+l+P+a + ++kKls +++ + +YI +L XP_009779323.1 71 KKLSHNASERNRRKKMNFLYSTLRSLIPPA-NLKKKKLSFPATVSYVQQYIPEL 123 6789***********************6.589999************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.713	70	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.07E-8	71	128	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-10	71	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-13	71	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-9	71	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.0E-6	76	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence Send to blast
MLAFSSSIFP NMSSEWSFEE AQNYDQQNNN ILQNEITNDL FEGLPIDHNS PSSYQQQYSK 60 EKSFDNSLMA KKLSHNASER NRRKKMNFLY STLRSLIPPA NLKKKKLSFP ATVSYVQQYI 120 PELKKEIERL SQTKDLLLSN KAGSLVQSNN INQRNTTSSA SISASPLCNG QVLVQISTTQ 180 TSFPISQVFQ TLEEDGILLL NATSFKSSGE KIFHNLHFQM QGTVGMEIQS LKTKLLVMYE 240 ENQNHTHLSA YNAPNTRHPT IKHHFWRLSR EKKNLVTTKD FEEKYPSANP RTWGVGMNPS 300 SICLCRIPAM KEYCHCQDLN IIAPDLAERI TYLRRETGEE LTLDRLTNLY SPKIFREGMI 360 NFSKQGHHAL LTNIDDYNDR GWMEQFIAVA TTYIIPKTAP SFTELWNRTP TRRTPPRVKG 420 LNQWVQKILD VTTPETRPLQ GSVAIPEEDI LANPADATRL LQEAFTRKCV SGPTSSASVE 480 EQQTTSTTFV VATSQPTMPS ASSPSFPALP SPLAIVTSSP PNIVAREEGV PLPQSPVHGS 540 VGQNYVFPFE DPQKKESITL SVSTGCHLLS WPVELANYLK PLALEKDINK IQTLPGECLL 600 NNAMHNAMVE VAPVKAQFEE TRANYIEVHN DILAASDREA TSAKRLRNLE AALNSKTDKD 660 TPTEEKYARM SRNTSEEAKT GVIGFDAEIA KAHELESTTK KGFPLDLMLP TLLVPVPILS 720 SRELKKNRKE

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence Send to blast

MLAFSSSIFP NMSSEWSFEE AQNYDQQNNN ILQNEITNDL FEGLPIDHNS PSSYQQQYSK  60
EKSFDNSLMA KKLSHNASER NRRKKMNFLY STLRSLIPPA NLKKKKLSFP ATVSYVQQYI  120
PELKKEIERL SQTKDLLLSN KAGSLVQSNN INQRNTTSSA SISASPLCNG QVLVQISTTQ  180
TSFPISQVFQ TLEEDGILLL NATSFKSSGE KIFHNLHFQM QGTVGMEIQS LKTKLLVMYE  240
ENQNHTHLSA YNAPNTRHPT IKHHFWRLSR EKKNLVTTKD FEEKYPSANP RTWGVGMNPS  300
SICLCRIPAM KEYCHCQDLN IIAPDLAERI TYLRRETGEE LTLDRLTNLY SPKIFREGMI  360
NFSKQGHHAL LTNIDDYNDR GWMEQFIAVA TTYIIPKTAP SFTELWNRTP TRRTPPRVKG  420
LNQWVQKILD VTTPETRPLQ GSVAIPEEDI LANPADATRL LQEAFTRKCV SGPTSSASVE  480
EQQTTSTTFV VATSQPTMPS ASSPSFPALP SPLAIVTSSP PNIVAREEGV PLPQSPVHGS  540
VGQNYVFPFE DPQKKESITL SVSTGCHLLS WPVELANYLK PLALEKDINK IQTLPGECLL  600
NNAMHNAMVE VAPVKAQFEE TRANYIEVHN DILAASDREA TSAKRLRNLE AALNSKTDKD  660
TPTEEKYARM SRNTSEEAKT GVIGFDAEIA KAHELESTTK KGFPLDLMLP TLLVPVPILS  720
SRELKKNRKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009779323.1	0.0	PREDICTED: uncharacterized protein LOC104228545
TrEMBL	A0A1U7WL74	0.0	A0A1U7WL74_NICSY; uncharacterized protein LOC104228545
STRING	XP_009779323.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2226	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	1e-33	bHLH family protein