 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009779237.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
bHLH |
| Protein Properties |
Length: 333aa MW: 37666.6 Da PI: 6.5236 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009779237.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 40 | 7.1e-13 | 153 | 200 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ h ++Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq
XP_009779237.1 153 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKYLKQLQ 200
6799************************.....9******************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MEYHGFNQQW PINSFDELSA ISIAASFGEN LHESFISQPN FGLKRPAEMS QNIYHERPLK 60
NPKTIQSWNN SYENDHILSS NLINSNNYTN QVANVKPKEE MTTMSSNSSI TFAADHQNLV 120
SQDSFANQNY MFKANYEGAK STVSTNGKLT QAQDHIIAER KRREKLSQRF IALSALIPGL 180
KKMDKASVLG DAIKYLKQLQ EKVKTLEEQI KKKSVESVVF VKKYELYGDG ENSSSDENYS 240
SGTLPIDEPL PEIEARFSEK DVLVRIHCEK KKGLVDKTVA EIEKLHLSVI NTCALSFGTS 300
ALDITIIAQM DEEFAMTVQD FVKNLRSALK MFM
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5gnj_A | 3e-14 | 154 | 228 | 8 | 80 | Transcription factor MYC2 |
| 5gnj_B | 3e-14 | 154 | 228 | 8 | 80 | Transcription factor MYC2 |
| 5gnj_E | 3e-14 | 154 | 228 | 8 | 80 | Transcription factor MYC2 |
| 5gnj_F | 3e-14 | 154 | 228 | 8 | 80 | Transcription factor MYC2 |
| 5gnj_G | 3e-14 | 154 | 228 | 8 | 80 | Transcription factor MYC2 |
| 5gnj_I | 3e-14 | 154 | 228 | 8 | 80 | Transcription factor MYC2 |
| 5gnj_M | 3e-14 | 154 | 228 | 8 | 80 | Transcription factor MYC2 |
| 5gnj_N | 3e-14 | 154 | 228 | 8 | 80 | Transcription factor MYC2 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 158 | 163 | ERKRRE |
| 2 | 159 | 164 | RKRREK |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC238928 | 1e-144 | AC238928.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-79n4 map 1, complete sequence. |
| GenBank | HG975513 | 1e-144 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
