PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009779237.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 333aa MW: 37666.6 Da PI: 6.5236 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 7.1e-13 | 153 | 200 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq XP_009779237.1 153 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKYLKQLQ 200 6799************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.821 | 150 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-10 | 153 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-17 | 154 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.22E-13 | 155 | 204 | No hit | No description |
SuperFamily | SSF47459 | 3.27E-17 | 155 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-15 | 156 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MEYHGFNQQW PINSFDELSA ISIAASFGEN LHESFISQPN FGLKRPAEMS QNIYHERPLK 60 NPKTIQSWNN SYENDHILSS NLINSNNYTN QVANVKPKEE MTTMSSNSSI TFAADHQNLV 120 SQDSFANQNY MFKANYEGAK STVSTNGKLT QAQDHIIAER KRREKLSQRF IALSALIPGL 180 KKMDKASVLG DAIKYLKQLQ EKVKTLEEQI KKKSVESVVF VKKYELYGDG ENSSSDENYS 240 SGTLPIDEPL PEIEARFSEK DVLVRIHCEK KKGLVDKTVA EIEKLHLSVI NTCALSFGTS 300 ALDITIIAQM DEEFAMTVQD FVKNLRSALK MFM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-14 | 154 | 228 | 8 | 80 | Transcription factor MYC2 |
5gnj_B | 3e-14 | 154 | 228 | 8 | 80 | Transcription factor MYC2 |
5gnj_E | 3e-14 | 154 | 228 | 8 | 80 | Transcription factor MYC2 |
5gnj_F | 3e-14 | 154 | 228 | 8 | 80 | Transcription factor MYC2 |
5gnj_G | 3e-14 | 154 | 228 | 8 | 80 | Transcription factor MYC2 |
5gnj_I | 3e-14 | 154 | 228 | 8 | 80 | Transcription factor MYC2 |
5gnj_M | 3e-14 | 154 | 228 | 8 | 80 | Transcription factor MYC2 |
5gnj_N | 3e-14 | 154 | 228 | 8 | 80 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 163 | ERKRRE |
2 | 159 | 164 | RKRREK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238928 | 1e-144 | AC238928.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-79n4 map 1, complete sequence. | |||
GenBank | HG975513 | 1e-144 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009779237.1 | 0.0 | PREDICTED: transcription factor bHLH18-like | ||||
Refseq | XP_016484096.1 | 0.0 | PREDICTED: transcription factor bHLH18-like | ||||
Swissprot | Q9T072 | 3e-65 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A1S4B5E3 | 0.0 | A0A1S4B5E3_TOBAC; transcription factor bHLH18-like | ||||
TrEMBL | A0A1U7WH05 | 0.0 | A0A1U7WH05_NICSY; transcription factor bHLH18-like | ||||
STRING | XP_009779237.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1760 | 24 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-60 | bHLH family protein |