PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009778969.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 284aa MW: 32663.2 Da PI: 9.8745 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.9 | 2.5e-15 | 64 | 153 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f k +++s+v++ +l+lp+ f++ h ++ ++t+tl des ++++ k+ ++++ l++GW++F a++L egD++ F+l + + l+v XP_009778969.1 64 FMKPMIRSNVTAGFWLSLPRFFCQLHL--PRHDTTVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLAHNLVEGDVLGFQLFRFCK--LKVY 150 89*********************8884..35678****************555555....9**********************865344..4777 PP EE- CS B3 96 vfr 98 ++r XP_009778969.1 151 IVR 153 766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-18 | 56 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-21 | 57 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.09E-23 | 62 | 153 | No hit | No description |
Pfam | PF02362 | 1.6E-13 | 64 | 154 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.6E-18 | 64 | 155 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.575 | 64 | 155 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MKDMSLRLQG THKQVFCKKP KKRRSCKNKM AMMQNLYGRF DLASSAKYRA EEVQSRLSTK 60 YPSFMKPMIR SNVTAGFWLS LPRFFCQLHL PRHDTTVTLV DESQEEYKTK YLAERNGLSG 120 GWRGFSLAHN LVEGDVLGFQ LFRFCKLKVY IVRANYLAEV DAALVLLHLD AHQKQANPVH 180 QMQDNRSTKQ GGIKRQRFSS QREEDDYSAE ENMLHKHSHP RNMFKDLDLP SKGLTYENLS 240 IVDAVKASKI NDPSNGFSSW NTRPTELEQL EISSFSGGYS IEPA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 5e-60 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009778969.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g42700-like isoform X2 | ||||
TrEMBL | A0A1U7WWB0 | 0.0 | A0A1U7WWB0_NICSY; B3 domain-containing protein At5g42700-like isoform X2 | ||||
STRING | XP_009778967.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-42 | B3 family protein |