 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_009778843.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 242aa MW: 28165.1 Da PI: 8.2088 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009778843.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 88 | 5.3e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rienk+nrqvtfskRr g+ KKA E+SvLCdaeva+i+fs++gk++eyss
XP_009778843.1 10 RIENKINRQVTFSKRRGGLVKKALEISVLCDAEVALIVFSHKGKIFEYSS 59
8***********************************************96 PP
|
| 2 | K-box | 107.1 | 2e-35 | 84 | 176 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
+ e++ +e+++ e+akLk++i+ Lqr+++h++GedL+sLslk+Lq+LeqqL++slk iRs+Kn+l++e+i+ lqkkek++qeen++L+kk++e
XP_009778843.1 84 NSESSVQENWSLEYAKLKAKIDLLQRNHKHYMGEDLDSLSLKDLQNLEQQLDTSLKLIRSRKNQLMHESISMLQKKEKAIQEENNMLSKKIKE 176
35677899**********************************************************************************987 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 3.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.441 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 1.44E-33 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.94E-39 | 2 | 75 | No hit | No description |
| PRINTS | PR00404 | 9.3E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 5.5E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 9.3E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 9.3E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 3.6E-31 | 84 | 174 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 17.908 | 90 | 180 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010582 | Biological Process | floral meristem determinacy |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 242 aa
Download sequence Send
to blast |
MGRGKVQLRR IENKINRQVT FSKRRGGLVK KALEISVLCD AEVALIVFSH KGKIFEYSSD 60
SCMEQILERY ERYSYTERRL LASNSESSVQ ENWSLEYAKL KAKIDLLQRN HKHYMGEDLD 120
SLSLKDLQNL EQQLDTSLKL IRSRKNQLMH ESISMLQKKE KAIQEENNML SKKIKEKDNT 180
VGQQVEWHQQ NQVPTSTSFL LQPHPCLNIG GNYQEEAEEA RRNELDLNLD SLYPCHMGCF 240
AT
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AF009127 | 0.0 | AF009127.1 Nicotiana tabacum NAP1-2 (NAP1-2) mRNA, complete cds. |
