PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009778190.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 558aa    MW: 64452.1 Da    PI: 8.3632
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009778190.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.11.3e-29100185187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ ++++yf+qlea
  XP_009778190.1 100 RWPRQETLTLLEVRSQLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRYFRQLEA 185
                     8*************************************999*****************************98..55667*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.99299158IPR017877Myb-like domain
CDDcd122033.74E-20100165No hitNo description
PfamPF138373.0E-20100186No hitNo description
PROSITE profilePS500904.286338400IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MDDHEYGMMD LTQYINGRPI FASNIPPHLH SDLLCSHQHY EMVMATVPQH NCVPHPTAAA  60
TARPSVSGGG GGATLSTASE MEGCGGGGVM RGGGDGGNGR WPRQETLTLL EVRSQLDSKF  120
KEANQKGPLW DEVSRIMSEE HGYQRSGKKC REKFENLYKY YKKTKEGKAG RQDGKHYRYF  180
RQLEALYGKT SNTISISETN NIGSSNFHYN NPINNNNQES HNFHHQGHKF SDSLISLSDS  240
SDSDHATSFD DSELNMDNDS KEKRKKKRGK RSWKGKIKDF VDIQMKKLIE KQEAWLEKMM  300
KTIEHKEQER ILREEEWKKQ ESIRIEKEQK FWAGERVWIE ARDAALIDAL HKLNGDQELI  360
KVNKNASICK DMNWDGINGY LIKCNKKQKE NCLSSYYNFK NNEEGRSYCE TSRHVPNVQI  420
MDPGMFQHWR DISWKFKVKC IDWSSVYISC GPFAFIILRI LIEILRITME LEALVFSVTS  480
AFTVITEGTW SGTCGRTIVW GIIGFEVVIH RCYVVEIIVR RHINIQGSRI EHELIMWLHF  540
SLFFFLNKQR ESLCHGRQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262270KRKKKRGKR
2263270RKKKRGKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778190.10.0PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A1U7WVC40.0A0A1U7WVC4_NICSY; trihelix transcription factor PTL-like
STRINGXP_009778190.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30632451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.18e-54Trihelix family protein