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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009778037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YA | ||||||||
Protein Properties | Length: 230aa MW: 25951.1 Da PI: 10.0997 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102 | 5.7e-32 | 72 | 128 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+e ekk +k+rkpylheSRh+hA+rR+Rg+gGrF XP_009778037.1 72 EEPVYVNAKQYHGILRRRQIRAKAELEKKA-IKARKPYLHESRHQHAMRRARGTGGRF 128 69***************************9.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.0E-36 | 70 | 131 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.039 | 71 | 131 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.3E-27 | 73 | 128 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.6E-24 | 74 | 96 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 76 | 96 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.6E-24 | 105 | 128 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MQYKQHLKHI TSTTAAIMGE HQKELTGHSA MLTSYPYPDL QYGGMMTYGA PVHPHLFEIH 60 HARMPLPLDM EEEPVYVNAK QYHGILRRRQ IRAKAELEKK AIKARKPYLH ESRHQHAMRR 120 ARGTGGRFLN TKKLNDMDCT TEEPKKYGAT IPTHSGNSSG SGSSDQREKE GYTVQDMHKG 180 RSRSFSTSNG HGSSMYFSEN TGNEQRNGYY GRGSWSLLVS QASRGAAPNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-20 | 72 | 132 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-127 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009778037.1 | 1e-173 | PREDICTED: nuclear transcription factor Y subunit A-7-like | ||||
Refseq | XP_016443427.1 | 1e-173 | PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
Refseq | XP_016443428.1 | 1e-173 | PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X2 | ||||
Swissprot | Q945M9 | 7e-37 | NFYA9_ARATH; Nuclear transcription factor Y subunit A-9 | ||||
TrEMBL | A0A1S3XU07 | 1e-172 | A0A1S3XU07_TOBAC; nuclear transcription factor Y subunit A-9-like isoform X2 | ||||
TrEMBL | A0A1S3XUQ6 | 1e-171 | A0A1S3XUQ6_TOBAC; nuclear transcription factor Y subunit A-1-like isoform X1 | ||||
TrEMBL | A0A1U7WDJ1 | 1e-172 | A0A1U7WDJ1_NICSY; nuclear transcription factor Y subunit A-7-like | ||||
STRING | XP_009778037.1 | 1e-172 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11232 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.1 | 8e-29 | nuclear factor Y, subunit A7 |
Publications ? help Back to Top | |||
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