PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009777500.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 329aa MW: 37342 Da PI: 6.7845

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009777500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.8	5.1e-17	23	103	2	74
trihelix 2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 Wt qe+++Liea++ ++er ++++ + +W++v +++++ + rs++qC++kw+nl +++kk++e e++++++ XP_009777500.1 23 WTVQETMVLIEAKKMDDERRNKRQgyinergkPTELRWKWVEDYCWRNSCLRSQNQCNDKWDNLMRDFKKVREYERREAEK 103 ************99999996433333333399***************************************997544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.097	15	87	IPR017877	Myb-like domain
Pfam	PF13837	1.2E-10	22	100	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MDNILVGDQG GSSMLRDYRK GNWTVQETMV LIEAKKMDDE RRNKRQGYIN ERGKPTELRW 60 KWVEDYCWRN SCLRSQNQCN DKWDNLMRDF KKVREYERRE AEKAAEGGEE IIRSYWKIEK 120 NERKEKSLPT NMLPEIYEAL VEVVDRKGQR MLPASLPPTL QQQSTQPQIA ALPLPPLPLP 180 LPPTTVVAQT AAHQLSDVAY TDQYPFPTMC DSSDPDTSDQ RSDSPAKKRR MSGEGTSSGT 240 AKGNINNSSQ EVGSAISKSA AIIAEAIQSC EEREERRHRE LLTLHERRLQ IEESKAEINR 300 EGINGLVDSI NKLANSILAL AGNKNQSAP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	1e-110	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009777500.1	0.0	PREDICTED: uncharacterized protein LOC104227066
Refseq	XP_016433408.1	0.0	PREDICTED: uncharacterized protein LOC107759919
TrEMBL	A0A1S3X142	0.0	A0A1S3X142_TOBAC; uncharacterized protein LOC107759919
TrEMBL	A0A1U7WTE5	0.0	A0A1U7WTE5_NICSY; uncharacterized protein LOC104227066
STRING	XP_009777500.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4821	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-48	Trihelix family protein