PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009776898.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 302aa MW: 32168.3 Da PI: 5.9703 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.4 | 1.4e-09 | 152 | 196 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a +L + v+Y+k L XP_009776898.1 152 HSIAERLRRERIAERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 196 99***********************55......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.06E-15 | 145 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.044 | 147 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-14 | 149 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.4E-7 | 152 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-10 | 153 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MANNPSEGPD DFFDQILGFP AYNGAEQNLA GNDGGAIPPA MMLQLNSGDV SGQFSGVGLG 60 VGLGGGGGGF HHPSQSGSFP LGLSLEGGKS GFMKMDDVSA VPGRRFRDDV VDSRASSSVK 120 PGFHGQPMPS MPHPPAIRPR VRARRGQATD PHSIAERLRR ERIAERIRAL QELVPSVNKT 180 DRAVMLDEIV DYVKFLRLQV KVLSMSRLGG AGAVAPLVTD IPISSVEEES SEGGNNQPAW 240 EKWSSDGTER QVAKLMEENV GSAMQFLQSK ALCIMPISLA SAIYHSQPPD TSSLIKPETN 300 PP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 161 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB017480 | 1e-116 | AB017480.2 Nicotiana tabacum mRNA for chloroplast FtsH protease, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776898.1 | 0.0 | PREDICTED: transcription factor UNE12-like | ||||
Refseq | XP_016484656.1 | 0.0 | PREDICTED: transcription factor UNE12-like | ||||
Swissprot | O22768 | 1e-116 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A1S4B701 | 0.0 | A0A1S4B701_TOBAC; transcription factor UNE12-like | ||||
TrEMBL | A0A1U7WE07 | 0.0 | A0A1U7WE07_NICSY; transcription factor UNE12-like | ||||
STRING | XP_009776898.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5799 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.2 | 1e-83 | bHLH family protein |
Publications ? help Back to Top | |||
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