PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009776426.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 485aa MW: 54256.8 Da PI: 7.9005 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5e-18 | 77 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p + r r++lg+f ta +Aa a+++ + +++g XP_009776426.1 77 CKYRGVRQRT-WGKWVAEIREP---N-RgSRIWLGTFSTALDAALAYDEVAISMYG 127 79*****999.**********8...3.35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.1E-12 | 77 | 127 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.05E-30 | 77 | 136 | No hit | No description |
PROSITE profile | PS51032 | 21.035 | 78 | 135 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-34 | 78 | 141 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.9E-30 | 78 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-19 | 78 | 136 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.0E-9 | 79 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 101 | 117 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MSTIIHESVT SSDVQFFNCI SLPLEMKKPM NGRMPSRNLL ARWKEQNTSL DSMRKAPAKG 60 SKKGCMKGKG GPDNQNCKYR GVRQRTWGKW VAEIREPNRG SRIWLGTFST ALDAALAYDE 120 VAISMYGSRA RLNLPNYISP NMSLSAPSNL DCVSTITSTH SEMTIDVHSG EKGCSSISGY 180 CIESKNVATH GYCLDKLPRS FNFIHWVCED CKSRECQECA GIRSNLFSSS GVEANVGPKL 240 KRKVNPTLGD ECIHEAMEDI LEINPAKELK PLTGLSDVVD YGSPLDVNKD MKNGIMNISQ 300 SNHGGKLNLG GNKYQGNCSN IFSGDVHQST TDYLQYALLP ESHQCAEPVI NPTWSGSFNI 360 LNGDHGTLDG IVARISSRAC KKVYDEACFF PSTLQLEIVP KSIVWPKNFL RSEPSDDIIA 420 LYFFPKDARD VAKFDDLVDE MIHQRLAMRT VVKNAELLVF TSMDLPRRHW RFQGKHYLWG 480 VFREE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-20 | 79 | 135 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776426.1 | 0.0 | PREDICTED: uncharacterized protein LOC104226206 | ||||
Refseq | XP_016447456.1 | 0.0 | PREDICTED: uncharacterized protein LOC107772453 isoform X2 | ||||
TrEMBL | A0A1S3Y5L6 | 0.0 | A0A1S3Y5L6_TOBAC; uncharacterized protein LOC107772453 isoform X2 | ||||
TrEMBL | A0A1U7WGP0 | 0.0 | A0A1U7WGP0_NICSY; uncharacterized protein LOC104226206 | ||||
STRING | XP_009776426.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2895 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 8e-32 | DRE-binding protein 2A |