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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009776202.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 218aa MW: 25053.5 Da PI: 10.4145 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.7 | 2.1e-13 | 17 | 93 | 9 | 97 |
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +k+g l +p f+ ++ +g+++ + + + +++W+vk+ ++++ +++ W eF++ +gL+ gD+++F+++g++ef v++f XP_009776202.1 17 PGFKNG-LKIPIGFL-KYlKGQNN---ERAILRKGSKKWRVKV--NGRR----FEASWAEFAQNHGLQLGDMLIFRHEGNMEF--EVTMF 93 566666.********.56455533...345667899*******..8887....9************************99999..66666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-19 | 3 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.55E-16 | 5 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.505 | 8 | 96 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.64E-14 | 9 | 93 | No hit | No description |
SMART | SM01019 | 4.9E-13 | 11 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-10 | 19 | 93 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MKKVSPKKPR FFKPILPGFK NGLKIPIGFL KYLKGQNNER AILRKGSKKW RVKVNGRRFE 60 ASWAEFAQNH GLQLGDMLIF RHEGNMEFEV TMFESRDNIW DSSDGCTTTS ISEEKKGNHK 120 TKHSKKTSTY MAYSSSQGIA SIQQESRPKS SLGQNGVAGL YPGVNFAHKE PEKDHNPPRR 180 SMDLTEAYLV SLAQVYDDQK VKMEEDLERR KKERNLKD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776202.1 | 1e-163 | PREDICTED: B3 domain-containing protein REM6-like | ||||
TrEMBL | A0A1U7W872 | 1e-162 | A0A1U7W872_NICSY; B3 domain-containing protein REM6-like | ||||
STRING | XP_009776202.1 | 1e-163 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31660.1 | 3e-23 | B3 family protein |