PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009776131.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 873aa MW: 99269.1 Da PI: 6.919

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009776131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.6	8.3e-08	100	130	60	90
FAR1 60 tgCkaklkvkkekdgkwevtkleleHnHela 90 +C+a+l+v+++ ++kw+vtk ++eH+H+l+ XP_009776131.1 100 ESCDAMLRVELKGQNKWVVTKYVKEHSHSLV 130 68***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-5	99	130	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-27	268	359	IPR018289	MULE transposase domain
Pfam	PF04434	1.6E-9	546	580	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.226	546	582	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-6	557	584	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence Send to blast
MDVEVIDVEQ GSMQHQGGIT DDGDDEPSES GEANVNGRSN APERDEVVEP QTGMVFHSED 60 QAKNFYDEYA RRLGFTTHVY QFNRLKTDFL CNGLRTVYGE SCDAMLRVEL KGQNKWVVTK 120 YVKEHSHSLV HPNKVHYHTS HRHFAVAKKN GPENNQGVGI VPSGVMYVSV DGNRIPLEIN 180 RGAKSTRSAE SDQTVKDNVP QSFSPRQCNQ RRTLGRDAQN LLNYFKKMQA ENPGFYYAIQ 240 LDKDNRMANV FWADARSRNA YSHFGDAVIL DTMYRVNQCR VPFAPFTGVN HHGQTILFGC 300 ALLLDESEAT FVWLFKTFLA AMNDRAPVSI ITDQDTVIQS AVAQVFPGTR HCINKWHVLR 360 GGQDRMAHVC HMYPNFQVEL YNCINLTETV EEFESYWETI LEKYDLKKND WLQSIYNTRR 420 QWVPAYFRDT FFAALSPNQE YECSFFDGYV NQQITLPLFF RQYERALENS FEKEIEADFD 480 TICTTPPLRT PSPMEKQAAT LYTKKIFLKF QEELVETFVY TANRIDGDGA LSTFRVAKFE 540 DDQKAYVVSL NISELKANCS CQMFECSGIL CRHILTVFTV TNVLTLPSHY ILKRWTINAK 600 CRAESDDHVQ LHGTESMAQK YNSLCREAIR YAEEGAVAQE TYKAALAALK EGGKKVALAK 660 RNVAKVSPPS SQVSGVGYDD RRTSASAPEM TPLLWPRQDE MTKRFNLNDT GIPARTIADL 720 NAQRMAPVSL HRGDGHADNT VILPCLKSMT WVMENKTSTP ANRVAVINLK LQDYSRTLSR 780 ESEVKFQLSR VTLEPMLKSM AYISEQLSTP ANRVAVINLK LQDTETTSGE SEVKFQVSRD 840 TLAAMLRSMA YIREQLSNTV ESQLENPAKK QRK

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence Send to blast

MDVEVIDVEQ GSMQHQGGIT DDGDDEPSES GEANVNGRSN APERDEVVEP QTGMVFHSED  60
QAKNFYDEYA RRLGFTTHVY QFNRLKTDFL CNGLRTVYGE SCDAMLRVEL KGQNKWVVTK  120
YVKEHSHSLV HPNKVHYHTS HRHFAVAKKN GPENNQGVGI VPSGVMYVSV DGNRIPLEIN  180
RGAKSTRSAE SDQTVKDNVP QSFSPRQCNQ RRTLGRDAQN LLNYFKKMQA ENPGFYYAIQ  240
LDKDNRMANV FWADARSRNA YSHFGDAVIL DTMYRVNQCR VPFAPFTGVN HHGQTILFGC  300
ALLLDESEAT FVWLFKTFLA AMNDRAPVSI ITDQDTVIQS AVAQVFPGTR HCINKWHVLR  360
GGQDRMAHVC HMYPNFQVEL YNCINLTETV EEFESYWETI LEKYDLKKND WLQSIYNTRR  420
QWVPAYFRDT FFAALSPNQE YECSFFDGYV NQQITLPLFF RQYERALENS FEKEIEADFD  480
TICTTPPLRT PSPMEKQAAT LYTKKIFLKF QEELVETFVY TANRIDGDGA LSTFRVAKFE  540
DDQKAYVVSL NISELKANCS CQMFECSGIL CRHILTVFTV TNVLTLPSHY ILKRWTINAK  600
CRAESDDHVQ LHGTESMAQK YNSLCREAIR YAEEGAVAQE TYKAALAALK EGGKKVALAK  660
RNVAKVSPPS SQVSGVGYDD RRTSASAPEM TPLLWPRQDE MTKRFNLNDT GIPARTIADL  720
NAQRMAPVSL HRGDGHADNT VILPCLKSMT WVMENKTSTP ANRVAVINLK LQDYSRTLSR  780
ESEVKFQLSR VTLEPMLKSM AYISEQLSTP ANRVAVINLK LQDTETTSGE SEVKFQVSRD  840
TLAAMLRSMA YIREQLSNTV ESQLENPAKK QRK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776131.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1U7WFV1	0.0	A0A1U7WFV1_NICSY; protein FAR1-RELATED SEQUENCE 3 isoform X1
STRING	XP_009776131.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]