PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009776014.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 228aa    MW: 25021 Da    PI: 7.2553
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009776014.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.2e-10141188455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_009776014.1 141 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 188
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.73E-9135192No hitNo description
SuperFamilySSF474592.09E-17135205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-17137204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-7141188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-10143193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDPMMNEARA FQAAAPNPPF NLAEIWPFPI NAGAAMPYAN GDHHFPINDP MLLDHRTNHR  60
SGSARKRRED DESAKGVSTS GNGLSESDSK RLKATGSNEN HESGGDGEGN SGKSADQPAK  120
SAEPPKDYIH VRARRGQATD SHSLAERARR EKISERMKIL QDLVPGCNKV IGKALVLDEI  180
INYVQSLQRQ VEFLSMKLEA VNTRVPPNIE GFPTKDHSLK IQDCNACV
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776014.11e-171PREDICTED: transcription factor BPE isoform X3
RefseqXP_016481164.11e-171PREDICTED: transcription factor BPE-like isoform X3
SwissprotQ0JXE78e-68BPE_ARATH; Transcription factor BPE
TrEMBLA0A1S4AWU91e-169A0A1S4AWU9_TOBAC; transcription factor BPE-like isoform X3
TrEMBLA0A1U7WMX81e-169A0A1U7WMX8_NICSY; transcription factor BPE isoform X3
STRINGXP_009776012.11e-160(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-64BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]