PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009775695.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 137aa    MW: 15756.8 Da    PI: 9.215
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009775695.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0584106123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C k Fs++  L  H++ H
  XP_009775695.1  84 FECHYCLKEFSNSQALGGHQNAH 106
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.67E-781112No hitNo description
Gene3DG3DSA:3.30.160.601.6E-581110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.44884111IPR007087Zinc finger, C2H2
PfamPF139129.9E-684108IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MEKDISTFFH PSCNIGGNES FSKSGMKIKR LKIFGFELDP CQKYMKGELG DRESVNSSCS  60
TISAGREKQP SNDAKDDDPT EKKFECHYCL KEFSNSQALG GHQNAHKKER MRKKRLQLQE  120
TKARLSYYLQ AFQIYTV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775695.12e-99PREDICTED: zinc finger protein 5-like isoform X2
TrEMBLA0A1U7WN535e-98A0A1U7WN53_NICSY; zinc finger protein 5-like isoform X2
STRINGXP_009775693.12e-94(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.14e-16C2H2 family protein